myRT

myRT report for GCA_003261075.1_ASM326107v1

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Seq: CM010227.1 Escherichia coli strain LBV005/17 plasmid pR005, complete sequence, whole genome shotgun sequence (139415 bp)
Overview 1 RT 1: 66286-69129 bp 2 RT 2: 79487-83275 bp Neighborhood of RT #1 [66286, 69131] PRK10173 PRK10173 RVT-GII PHA02517 InsE Neighborhood of RT #2 [79487, 83313] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 66286-66735 bp Feature: domain Description: PRK10173 Location: 66289-66727 bp Feature: domain Description: PRK1 01 73 Location: 66289-66727 bp Feature: gene Location: 66719-67030 bp Feature: domain Description: PRK10173 Location: 66722-66941 bp Feature: domain Description: PRK1 01 73 Location: 66722-66941 bp Feature: gene Location: 67084-67572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67342-67414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67342-6741 4 bp Feature: gene Location: 68164-68643 bp Feature: domain Description: PHA02517 Location: 68224-68578 bp Feature: domain Description: PHA0251 7 Location: 68224-68578 bp Feature: gene Location: 68805-69131 bp Feature: domain Description: InsE Location: 68808-69129 bp Feature: domain Description: InsE Location: 68808-691 29 bp Feature: gene Location: 79487-79813 bp Feature: domain Description: InsE Location: 79490-79811 bp Feature: domain Description: InsE Location: 79490-7981 1 bp Feature: gene Location: 79813-80292 bp Feature: domain Description: PHA02517 Location: 79873-80227 bp Feature: domain Description: PHA0251 7 Location: 79873-80227 bp Feature: gene Location: 80884-82407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81157-81889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 1 57-81 889 bp Feature: domain Description: GIIM Note: maturase Location: 81964-82162 bp Feature: domain Description: GIIM Note: maturase Location: 81 964-821 62 bp Feature: gene Location: 82584-82880 bp Feature: domain Description: PHA02517 Location: 82587-82836 bp Feature: domain Description: PHA0251 7 Location: 82587-82836 bp Feature: gene Location: 82909-83313 bp Feature: domain Description: InsE Location: 82939-83275 bp Feature: domain Description: InsE Location: 82939-83275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), GIIM (pfam08388)

Seq: QLNJ01000148.1 Escherichia coli strain LBV005/17 E.coli_LBV005_17_strain_pyometra_Contig147, whole genome shotgun sequence (10275 bp)
Overview 1 RT 1: 2-2430 bp Neighborhood of RT #1 [2, 2430] RT_Bac_retron_II RVT-Retrons Feature: gene Location: 2-937 bp Feature: domain Description: RT_Bac_retron_II Location: 14-152 bp Feature: domain Description: RT_Bac_retron_II Location: 14-152 bp Feature: gene Location: 973-1635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1132-1618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1132 -1618 bp Feature: gene Location: 1856-1999 bp Feature: gene Location: 2191-2430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RT_Bac_retron_II (cd03487), RVT-Retrons

Seq: QLNJ01000168.1 Escherichia coli strain LBV005/17 E.coli_LBV005_17_strain_pyometra_Contig167, whole genome shotgun sequence (7716 bp)
Overview 1 RT 1: 157-7380 bp Neighborhood of RT #1 [157, 7380] DDE_Tnp_IS66_C GIIM RVT-GII DDE_Tnp_IS66 COG3436 HTH_23 InsE RVT-GII RVT-GII Feature: gene Location: 157-303 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 169-280 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 169-280 bp Feature: gene Location: 420-791 bp Feature: domain Description: GIIM Note: maturase Location: 492-714 bp Feature: domain Description: GIIM Note: maturase Location: 492-714 bp Feature: gene Location: 940-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1141-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1141-1642 bp Feature: gene Location: 2102-2491 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2207-2450 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2207-2450 bp Feature: gene Location: 2467-3543 bp Feature: domain Description: COG3436 Location: 2779-3250 bp Feature: domain Description: COG3 43 6 Location: 2779-3 250 bp Feature: gene Location: 3910-4560 bp Feature: domain Description: HTH_23 Location: 3961-4060 bp Feature: domain Description: HTH_23 Location: 3 961-4060 bp Feature: domain Description: InsE Location: 4186-4537 bp Feature: domain Description: InsE Location: 4186-453 7 bp Feature: gene Location: 4932-5135 bp Feature: gene Location: 5542-5916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5548-5719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5548-5719 bp Feature: gene Location: 5932-6744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6205-6661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6205-6661 bp Feature: gene Location: 7147-7380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase ), GIIM (pfam08388), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: QLNJ01000186.1 Escherichia coli strain LBV005/17 E.coli_LBV005_17_strain_pyometra_Contig185, whole genome shotgun sequence (5608 bp)
Overview 1 RT 1: 983-4824 bp Neighborhood of RT #1 [983, 4922] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 983-1135 bp Feature: domain Description: rve_2 Location: 1013-1121 bp Feature: domain Description: rve_2 Location: 1013-1121 bp Feature: gene Location: 1408-1713 bp Feature: gene Location: 1756-3144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086-2704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086-2704 bp Feature: domain Description: GIIM Note: maturase Location: 2752-2983 bp Feature: domain Description: GIIM Note: maturase Location: 2752-2983 bp Feature: gene Location: 3531-4145 bp Feature: domain Description: InsG Location: 3534-4125 bp Feature: domain Description: InsG Location: 3534 -4 125 bp Feature: gene Location: 4149-4922 bp Feature: domain Description: Transposase_20 Location: 4578-4824 bp Feature: domain Description: Transposase_20 Location: 4 578-4 824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371), rve_2 (pfam13333)