myRT

myRT report for GCA_003261145.1_ASM326114v1

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Seq: QLNK01000018.1 Escherichia coli strain ECWJ1 ECWJ1_paired__contig_18, whole genome shotgun sequence (180089 bp)
Overview 1 RT 1: 153048-157331 bp Neighborhood of RT #1 [153048, 157339] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 153048-153953 bp Feature: gene Location: 154091-154282 bp Feature: gene Location: 154439-154978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154769-154847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54769-1 54847 bp Feature: gene Location: 155006-155527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155012-155294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5501 2-1 55294 bp Feature: domain Description: GIIM Note: maturase Location: 155342-155522 bp Feature: domain Description: GIIM Note: maturase Location: 1 55342-1 55522 bp Feature: gene Location: 155849-156037 bp Feature: gene Location: 156077-157339 bp Feature: domain Description: YesM Location: 156590-157331 bp Feature: domain Description: YesM Location: 1 56590-1 57331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: QLNK01000002.1 Escherichia coli strain ECWJ1 ECWJ1_paired__contig_2, whole genome shotgun sequence (309191 bp)
Overview 1 RT 1: 305165-308251 bp Neighborhood of RT #1 [305165, 308292] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 305165-305314 bp Feature: gene Location: 305615-306601 bp Feature: gene Location: 306603-307535 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 306705-307299 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 306705-3072 99 bp Feature: gene Location: 307561-307806 bp Feature: gene Location: 307990-308292 bp Feature: domain Description: Arm-DNA-bind_3 Location: 307999-308251 bp Feature: domain Description: Arm-DNA-bind_3 Location: 307999-3082 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: QLNK01000024.1 Escherichia coli strain ECWJ1 ECWJ1_paired__contig_24, whole genome shotgun sequence (85639 bp)
Overview 1 RT 1: 6254-12721 bp Neighborhood of RT #1 [6254, 12721] PinE RVT-GII Feature: gene Location: 6254-6472 bp Feature: domain Description: PinE Location: 6257-6464 bp Feature: domain Description: PinE Location: 6257-6464 bp Feature: gene Location: 6507-6878 bp Feature: gene Location: 6764-8251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7169-7859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7169-7859 bp Feature: gene Location: 8302-8535 bp Feature: gene Location: 8684-12721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII

Seq: QLNK01000078.1 Escherichia coli strain ECWJ1 ECWJ1_paired__contig_83, whole genome shotgun sequence (2495 bp)
Overview 1 RT 1: 1-2368 bp Neighborhood of RT #1 [1, 2403] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-162 bp Feature: gene Location: 736-2403 bp Feature: domain Description: RVT_N Location: 784-1021 bp Feature: domain Description: RVT_N Location: 784 -1021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1072-1714 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1999 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1999 bp Feature: domain Description: HNHc Note: nucleases Location: 2209-2368 bp Feature: domain Description: HNHc Note: nucleases Location: 2209-2368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QLNK01000084.1 Escherichia coli strain ECWJ1 ECWJ1_paired__contig_93, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 92-2271 bp Neighborhood of RT #1 [92, 2271] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365 -1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: gene Location: 1909-2271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)