myRT

myRT report for GCA_003261315.1_ASM326131v1

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Seq: QLKN01000189.1 Hapalosiphonaceae cyanobacterium JJU2 Scaffold_189, whole genome shotgun sequence (1772 bp)
Overview 1 RT 1: 2-1619 bp Neighborhood of RT #1 [2, 1663] RVT_N RVT-GII GIIM McrA Feature: gene Location: 2-1663 bp Feature: domain Description: RVT_N Location: 8-176 bp Feature: domain Description: RVT_N Location: 8-1 76 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218-917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 8-91 7 bp Feature: domain Description: GIIM Note: maturase Location: 1022-1253 bp Feature: domain Description: GIIM Note: maturase Location: 1 022-1 253 bp Feature: domain Description: McrA Location: 1352-1619 bp Feature: domain Description: McrA Location: 1 352-1 61 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: QLKN01000191.1 Hapalosiphonaceae cyanobacterium JJU2 Scaffold_191, whole genome shotgun sequence (799 bp)
Overview 1 RT 1: 3-759 bp Neighborhood of RT #1 [3, 797] RVT-UG3 RVT_thumb RVT_connect Feature: gene Location: 3-797 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 168-405 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 168-405 bp Feature: domain Description: RVT_thumb Location: 462-645 bp Feature: domain Description: RVT_thumb Location: 462 -645 bp Feature: domain Description: RVT_connect Location: 690-759 bp Feature: domain Description: RVT_connect Location: 690-759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, RVT_thumb (pfam06817), RVT_connect (pfam06815)

Seq: QLKN01000040.1 Hapalosiphonaceae cyanobacterium JJU2 Scaffold_40, whole genome shotgun sequence (5181 bp)
Overview 1 RT 1: 1-2890 bp Neighborhood of RT #1 [1, 2890] RVT-GII GIIM HNH RVT_N RVT-GII PRK12275 Feature: gene Location: 1-141 bp Feature: gene Location: 244-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 -3 40 bp Feature: domain Description: GIIM Note: maturase Location: 418-646 bp Feature: domain Description: GIIM Note: maturase Location: 418-646 bp Feature: domain Description: HNH Note: nucleases Location: 877-1012 bp Feature: domain Description: HNH Note: nucleases Location: 877-1012 bp Feature: gene Location: 1098-1667 bp Feature: domain Description: RVT_N Location: 1146-1386 bp Feature: domain Description: RVT_N Location: 1146-13 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440-1623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1440-1623 bp Feature: gene Location: 1852-2217 bp Feature: domain Description: PRK12275 Location: 1861-2200 bp Feature: domain Description: PRK12275 Location: 1861-2200 bp Feature: gene Location: 2498-2890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), RVT_N (pfam13655), PRK12275 (hypothetical protein; Reviewed)

Seq: QLKN01000045.1 Hapalosiphonaceae cyanobacterium JJU2 Scaffold_45, whole genome shotgun sequence (27003 bp)
Overview 1 RT 1: 11265-17713 bp Neighborhood of RT #1 [11265, 17727] AarF RVT-DGRs Avd_like YfmG Feature: gene Location: 11265-11639 bp Feature: gene Location: 11824-13536 bp Feature: domain Description: AarF Location: 11863-13357 bp Feature: domain Description: AarF Location: 11863-13357 bp Feature: gene Location: 14580-15638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14787-15432 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14 787-154 32 bp Feature: gene Location: 15635-15982 bp Feature: domain Description: Avd_like Location: 15653-15959 bp Feature: domain Description: Avd_like Location: 15653-15959 bp Feature: gene Location: 16150-17727 bp Feature: domain Description: YfmG Location: 16921-17713 bp Feature: domain Description: YfmG Location: 16921-17713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AarF (COG0661), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)