myRT

myRT report for GCA_003267915.1_ASM326791v1

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Seq: LSFH01000427.1 Pseudomonas aeruginosa strain PA130788 contig_6, whole genome shotgun sequence (387521 bp)
Overview 1 RT 1: 83914-94211 bp Neighborhood of RT #1 [83914, 94222] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 83914-85767 bp Feature: domain Description: PRK05658 Location: 83926-85765 bp Feature: domain Description: PRK05658 Location: 83926-85765 bp Feature: gene Location: 85874-89611 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85982-86639 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85982-86639 bp Feature: domain Description: PRK09776 Location: 86852-87323 bp Feature: domain Description: PRK09776 Location: 86852-87323 bp Feature: domain Description: PAS Location: 87395-87905 bp Feature: domain Description: PAS Location: 87395-87905 bp Feature: domain Description: PRK10060 Location: 87914-89561 bp Feature: domain Description: PRK1 0060 Location: 8791 4-89561 bp Feature: gene Location: 90692-92377 bp Feature: RT Description: RVT_N Location: 90749-90989 bp Feature: RT Description: RVT_N Location: 90749-90989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91037-91673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 037-91 673 bp Feature: domain Description: GIIM Note: maturase Location: 91727-91958 bp Feature: domain Description: GIIM Note: maturase Location: 91 727-91 958 bp Feature: domain Description: HNH Note: nucleases Location: 92210-92348 bp Feature: domain Description: HNH Note: nucleases Location: 9221 0-92348 bp Feature: gene Location: 92705-92842 bp Feature: gene Location: 93101-94222 bp Feature: domain Description: COG3177 Location: 93119-94211 bp Feature: domain Description: COG31 77 Location: 931 1 9-9421 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )