myRT

myRT report for GCA_003268975.1_ASM326897v1

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Seq: QLTF01000001.1 Rahnella sp. NFIX50 Ga0059074_101, whole genome shotgun sequence (785930 bp)
Overview 1 RT 1: 13812-19102 bp 2 RT 2: 274895-281397 bp Neighborhood of RT #1 [13812, 19102] DUF5375 COG4643 COG3378 RVT-Retrons TIR_2 PRK09692 Neighborhood of RT #2 [274895, 281423] RVT-Retrons Q P Feature: gene Location: 13812-14153 bp Feature: domain Description: DUF5375 Location: 13836-14115 bp Feature: domain Description: DUF5375 Location: 1 3836-1 41 1 5 bp Feature: gene Location: 14165-15910 bp Feature: domain Description: COG4643 Location: 14177-14429 bp Feature: domain Description: COG4643 Location: 1 41 77-1 4429 bp Feature: domain Description: COG3378 Location: 14447-15902 bp Feature: domain Description: COG3378 Location: 1 4447-1 5902 bp Feature: gene Location: 16241-17887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16559-17156 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6559-1 71 56 bp Feature: domain Description: TIR_2 Location: 17483-17843 bp Feature: domain Description: TIR_2 Location: 1 7483-1 7843 bp Feature: gene Location: 18600-18830 bp Feature: domain Description: PRK09692 Location: 18606-18789 bp Feature: domain Description: PRK09692 Location: 1 8606-1 8789 bp Feature: gene Location: 18968-19102 bp Feature: gene Location: 274895-275434 bp Feature: gene Location: 275767-275985 bp Feature: gene Location: 276326-278164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 276461-277157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 276461 -2771 57 bp Feature: gene Location: 278339-279370 bp Feature: domain Description: Q Location: 278342-279362 bp Feature: domain Description: Q Location: 278342-279362 bp Feature: gene Location: 279372-281423 bp Feature: domain Description: P Location: 279687-281397 bp Feature: domain Description: P Location: 279687-281 397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), PRK09692 (Integrase; provisional), Q (PHA02536), P (PHA02535)