myRT

myRT report for GCA_003269035.1_ASM326903v1

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Seq: QLTK01000001.1 Paraburkholderia bryophila strain LMG 23644 Ga0139076_101, whole genome shotgun sequence (801010 bp)
Overview 1 RT 1: 790981-795038 bp Neighborhood of RT #1 [790981, 795038] TrfA PBP2_LTTR_aromatics_like RVT-GII Feature: gene Location: 790981-791898 bp Feature: domain Description: TrfA Location: 791101-791728 bp Feature: domain Description: TrfA Location: 791 1 01 -791 728 bp Feature: gene Location: 792250-792480 bp Feature: domain Description: PBP2_LTTR_aromatics_like Location: 792256-792439 bp Feature: domain Description: PBP2_LTTR_aromatics_like Location: 792256-792439 bp Feature: gene Location: 792697-793074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792703-792952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792703-792952 bp Feature: gene Location: 793599-794405 bp Feature: gene Location: 794676-795038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrfA (pfam07042), PBP2_LTTR_aromatics_like (cd08414), RVT-GII

Seq: QLTK01000002.1 Paraburkholderia bryophila strain LMG 23644 Ga0139076_102, whole genome shotgun sequence (699743 bp)
Overview 1 RT 1: 343009-348966 bp 2 RT 2: 681417-690621 bp Neighborhood of RT #1 [343009, 349007] DEXHc_Ski2 RVT-Retrons YGGT YGGT Neighborhood of RT #2 [681417, 690621] RVT-Retrons YbjD YbjD Feature: gene Location: 343009-343896 bp Feature: domain Description: DEXHc_Ski2 Location: 343453-343792 bp Feature: domain Description: DEXHc_Ski2 Location: 343453-343792 bp Feature: gene Location: 344277-344495 bp Feature: gene Location: 344818-345858 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 344971-345529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 344971-34552 9 bp Feature: gene Location: 347086-347352 bp Feature: gene Location: 348444-349007 bp Feature: domain Description: YGGT Location: 348477-348684 bp Feature: domain Description: YGGT Location: 348477-348684 bp Feature: domain Description: YGGT Location: 348768-348966 bp Feature: domain Description: YGGT Location: 348768-348966 bp Feature: gene Location: 681417-682061 bp Feature: gene Location: 682875-683132 bp Feature: gene Location: 683440-684411 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 683587-684163 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 683587-684163 bp Feature: gene Location: 684644-686416 bp Feature: domain Description: YbjD Location: 684650-684722 bp Feature: domain Description: YbjD Location: 684650-68472 2 bp Feature: domain Description: YbjD Location: 685532-685742 bp Feature: domain Description: YbjD Location: 685532 -685742 bp Feature: gene Location: 686770-690621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Ski2 (cd17921), RVT-Retrons, YGGT (pfam02325), YbjD (COG3593)

Seq: QLTK01000004.1 Paraburkholderia bryophila strain LMG 23644 Ga0139076_104, whole genome shotgun sequence (387477 bp)
Overview 1 RT 1: 51015-57158 bp Neighborhood of RT #1 [51015, 57169] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 ilvH Feature: gene Location: 51015-51881 bp Feature: domain Description: PssA Location: 51144-51825 bp Feature: domain Description: PssA Location: 51144-51825 bp Feature: gene Location: 51906-52544 bp Feature: domain Description: PRK05305 Location: 51930-52539 bp Feature: domain Description: PRK053 05 Location: 5193 0-5253 9 bp Feature: gene Location: 52662-54263 bp Feature: domain Description: RVT_N Location: 52665-52863 bp Feature: domain Description: RVT_N Location: 52665-52863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52908-53556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52908-53 556 bp Feature: domain Description: GIIM Note: maturase Location: 53607-53841 bp Feature: domain Description: GIIM Note: maturase Location: 53 607-53 841 bp Feature: domain Description: HNHc Note: nucleases Location: 54084-54225 bp Feature: domain Description: HNHc Note: nucleases Location: 54084-54225 bp Feature: gene Location: 55541-56557 bp Feature: domain Description: PRK05479 Location: 55544-56525 bp Feature: domain Description: PRK05479 Location: 55544-56525 bp Feature: gene Location: 56678-57169 bp Feature: domain Description: ilvH Location: 56681-57158 bp Feature: domain Description: ilvH Location: 56681-57158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895)

Seq: QLTK01000012.1 Paraburkholderia bryophila strain LMG 23644 Ga0139076_112, whole genome shotgun sequence (181883 bp)
Overview 1 RT 1: 20922-27012 bp Neighborhood of RT #1 [20922, 27026] YdcF-like RVT-Retrons GlxA GyrI-like 2A0305 Feature: gene Location: 20922-21482 bp Feature: domain Description: YdcF-like Location: 21021-21411 bp Feature: domain Description: YdcF-like Location: 21021-214 11 bp Feature: gene Location: 21729-22508 bp Feature: gene Location: 22543-24003 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23107-23746 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23107-2374 6 bp Feature: gene Location: 24502-25368 bp Feature: domain Description: GlxA Location: 24529-24847 bp Feature: domain Description: GlxA Location: 24 529-24 84 7 bp Feature: domain Description: GyrI-like Location: 24901-25363 bp Feature: domain Description: GyrI-like Location: 24 901-25363 bp Feature: gene Location: 25623-27026 bp Feature: domain Description: 2A0305 Location: 25668-27012 bp Feature: domain Description: 2A0305 Location: 25668-27012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdcF-like (cl00630), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445), 2A0305 (TIGR00908)

Seq: QLTK01000030.1 Paraburkholderia bryophila strain LMG 23644 Ga0139076_130, whole genome shotgun sequence (84933 bp)
Overview 1 RT 1: 50452-57044 bp Neighborhood of RT #1 [50452, 57044] acid_phos_Burk COG2343 RVT-Retrons HTH_XRE Feature: gene Location: 50452-52032 bp Feature: domain Description: acid_phos_Burk Location: 50560-52024 bp Feature: domain Description: acid_phos_Burk Location: 5 05 60-5 2024 bp Feature: gene Location: 52126-52686 bp Feature: domain Description: COG2343 Location: 52330-52675 bp Feature: domain Description: COG2343 Location: 5 2330-5 2675 bp Feature: gene Location: 53310-55067 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53454-54081 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 345 4-5 4081 bp Feature: gene Location: 55875-56174 bp Feature: domain Description: HTH_XRE Location: 55929-56097 bp Feature: domain Description: HTH_XRE Location: 5 5 929-5 6097 bp Feature: gene Location: 56367-57044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT acid_phos_Burk (TIGR03397), COG2343 (Uncharacterized conserved protein, DUF427 family ), RVT-Retrons, HTH_XRE (smart00530)

Seq: QLTK01000061.1 Paraburkholderia bryophila strain LMG 23644 Ga0139076_161, whole genome shotgun sequence (6744 bp)
Overview 1 RT 1: 2-1595 bp Neighborhood of RT #1 [2, 1657] RVT-GII COG4710 Feature: gene Location: 2-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-122 bp Feature: gene Location: 947-1288 bp Feature: gene Location: 1433-1657 bp Feature: domain Description: COG4710 Location: 1436-1595 bp Feature: domain Description: COG4710 Location: 1436 -1595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4710 (Predicted DNA-binding protein with an HTH domain )

Seq: QLTK01000088.1 Paraburkholderia bryophila strain LMG 23644 Ga0139076_188, whole genome shotgun sequence (1109 bp)
Overview 1 RT 1: 1-1103 bp Neighborhood of RT #1 [1, 1108] RVT-GII Feature: gene Location: 1-144 bp Feature: gene Location: 479-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 7 0-1103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII