myRT

myRT report for GCA_003269215.1_ASM326921v1

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Seq: QLTR01000009.1 Vibrio diazotrophicus strain 99A Ga0227285_109, whole genome shotgun sequence (171404 bp)
Overview 1 RT 1: 37638-41392 bp Neighborhood of RT #1 [37638, 41400] RVT-GII RVT-CRISPR-like HTH_1 PBP2_CrgA_like_1 adh_III_F_hyde Feature: gene Location: 37638-37853 bp Feature: gene Location: 38004-38213 bp Feature: gene Location: 38296-38856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38509-38851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38509-38851 bp Feature: gene Location: 38890-39051 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 38896-39040 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 38896-39040 bp Feature: gene Location: 39194-40063 bp Feature: domain Description: HTH_1 Location: 39224-39383 bp Feature: domain Description: HTH_1 Location: 39224-39383 bp Feature: domain Description: PBP2_CrgA_like_1 Location: 39470-40058 bp Feature: domain Description: PBP2_CrgA_like_1 Location: 39470-40058 bp Feature: gene Location: 40252-41400 bp Feature: domain Description: adh_III_F_hyde Location: 40291-41392 bp Feature: domain Description: adh_III_F_hyde Location: 40291 -41 392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RVT-CRISPR, HTH_1 (pfam00126), PBP2_CrgA_like_1 (cd08470), adh_III_F_hyde (TIGR02818)

Seq: QLTR01000010.1 Vibrio diazotrophicus strain 99A Ga0227285_110, whole genome shotgun sequence (162700 bp)
Overview 1 RT 1: 95081-98767 bp Neighborhood of RT #1 [95081, 98886] RVT-GII GIIM HTH_31 Couple_hipA HipA_C Feature: gene Location: 95081-95290 bp Feature: gene Location: 95594-95803 bp Feature: gene Location: 95878-96903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95884-96424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95884-9642 4 bp Feature: domain Description: GIIM Note: maturase Location: 96472-96676 bp Feature: domain Description: GIIM Note: maturase Location: 96472 -96676 bp Feature: gene Location: 97188-97541 bp Feature: domain Description: HTH_31 Location: 97299-97482 bp Feature: domain Description: HTH_31 Location: 972 99-97482 bp Feature: gene Location: 97531-98886 bp Feature: domain Description: Couple_hipA Location: 97594-97891 bp Feature: domain Description: Couple_hipA Location: 97594-97891 bp Feature: domain Description: HipA_C Location: 98065-98767 bp Feature: domain Description: HipA_C Location: 98065-98767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_31 (pfam13560), Couple_hipA (pfam13657), HipA_C (pfam07804)

Seq: QLTR01000014.1 Vibrio diazotrophicus strain 99A Ga0227285_114, whole genome shotgun sequence (111187 bp)
Overview 1 RT 1: 9524-13727 bp Neighborhood of RT #1 [9524, 13732] tdh RVT-DGRs PHA00652 phage_tail_N PHA00653 Feature: gene Location: 9524-9694 bp Feature: domain Description: tdh Location: 9536-9692 bp Feature: domain Description: tdh Location: 953 6-9692 bp Feature: gene Location: 9770-10012 bp Feature: gene Location: 9997-10989 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10210-10801 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 10210-10801 bp Feature: gene Location: 11267-11632 bp Feature: domain Description: PHA00652 Location: 11291-11624 bp Feature: domain Description: PHA00652 Location: 11291-11624 bp Feature: gene Location: 11648-13732 bp Feature: domain Description: phage_tail_N Location: 11657-12044 bp Feature: domain Description: phage_tail_N Location: 11657-12044 bp Feature: domain Description: PHA00653 Location: 12854-13727 bp Feature: domain Description: PHA00653 Location: 12854-13 727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00652 (hypothetical protein), phage_tail_N (pfam08400), PHA00653 (mtd;major tropism determinant), tdh (TIGR00692), RVT-DGRs

Seq: QLTR01000031.1 Vibrio diazotrophicus strain 99A Ga0227285_131, whole genome shotgun sequence (48568 bp)
Overview 1 RT 1: 43516-48289 bp Neighborhood of RT #1 [43516, 48289] NhaC PRK10328 RVT-GII GIIM Feature: gene Location: 43516-45117 bp Feature: domain Description: NhaC Location: 43534-45073 bp Feature: domain Description: NhaC Location: 4 3534 -4 5073 bp Feature: gene Location: 45818-46228 bp Feature: domain Description: PRK10328 Location: 45821-46226 bp Feature: domain Description: PRK10328 Location: 4 5821-4 6226 bp Feature: gene Location: 46575-47879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46863-47505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6863-4 7505 bp Feature: domain Description: GIIM Note: maturase Location: 47577-47784 bp Feature: domain Description: GIIM Note: maturase Location: 4 7577-4 7784 bp Feature: gene Location: 48080-48289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NhaC (COG1757), PRK10328 (DNA-binding protein StpA), RVT-GII, GIIM (pfam08388)

Seq: QLTR01000050.1 Vibrio diazotrophicus strain 99A Ga0227285_150, whole genome shotgun sequence (18216 bp)
Overview 1 RT 1: 11177-17661 bp Neighborhood of RT #1 [11177, 17726] RVT-GII RVT-GII DUF4158 DDE_Tnp_Tn3 Feature: gene Location: 11177-11362 bp Feature: gene Location: 11384-11683 bp Feature: gene Location: 11914-12372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11920-12097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11920-12097 bp Feature: gene Location: 12529-12930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12577-12925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125 77-12925 bp Feature: gene Location: 14377-14604 bp Feature: gene Location: 14748-17726 bp Feature: domain Description: DUF4158 Location: 14775-15267 bp Feature: domain Description: DUF415 8 Location: 14775 -15 267 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 16491-17661 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 16491-17661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526)