myRT

myRT report for GCA_003269315.1_ASM326931v1

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Seq: QLYU01000010.1 Pseudomonas sp. MDMC224 NODE_10_length_218286_cov_12.7135, whole genome shotgun sequence (218286 bp)
Overview 1 RT 1: 2-3229 bp Neighborhood of RT #1 [2, 3229] DUF772 RVT-GII GIIM Feature: gene Location: 2-661 bp Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 1 70-365 bp Feature: gene Location: 1050-2318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263-1 920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1 998-2220 bp Feature: gene Location: 2468-2866 bp Feature: gene Location: 3050-3229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: QLYU01000042.1 Pseudomonas sp. MDMC224 NODE_42_length_3393_cov_2.53215, whole genome shotgun sequence (3393 bp)
Overview 1 RT 1: 1-2645 bp Neighborhood of RT #1 [1, 3103] Transposase_22 Tnp_22_dsRBD L1-EN RVT-UNC RVT-UG11 Feature: gene Location: 1-324 bp Feature: domain Description: Transposase_22 Location: 4-64 bp Feature: domain Description: Transposase_2 2 Location: 4-64 bp Feature: domain Description: Tnp_22_dsRBD Location: 73-265 bp Feature: domain Description: Tnp_2 2 _dsRBD Location: 73-2 65 bp Feature: gene Location: 388-1866 bp Feature: domain Description: L1-EN Location: 418-1099 bp Feature: domain Description: L1-EN Location: 418-1099 bp Feature: gene Location: 1992-2396 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2001-2298 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2 001-2 2 98 bp Feature: gene Location: 2399-3103 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2453-2645 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 453-2 645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_22 (pfam02994), Tnp_22_dsRBD (pfam17490), L1-EN (cd09076), RVT-DGRs/RVT-CRISPR/RVT-GII/RVT-UG5(RVT-UNC), RVT-UG11

Seq: QLYU01000044.1 Pseudomonas sp. MDMC224 NODE_44_length_2931_cov_30.9982, whole genome shotgun sequence (2931 bp)
Overview 1 RT 1: 138-2733 bp Neighborhood of RT #1 [138, 2733] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 138-1871 bp Feature: domain Description: RVT_N Location: 198-441 bp Feature: domain Description: RVT_N Location: 198-441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1140 bp Feature: domain Description: GIIM Note: maturase Location: 1218-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1218-1446 bp Feature: domain Description: HNHc Note: nucleases Location: 1674-1830 bp Feature: domain Description: HNHc Note: nucleases Location: 1674-183 0 bp Feature: gene Location: 2046-2174 bp Feature: gene Location: 2485-2733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)