myRT

myRT report for GCA_003269915.1_ASM326991v1

Download annotations/find similar RTs

Seq: LVYL01000055.1 Bacillus endophyticus strain 3631_9D plasmid pBEH4 3631_9D_contig_8, whole genome shotgun sequence (40099 bp)
Overview 1 RT 1: 25059-30276 bp Neighborhood of RT #1 [25059, 30329] DUF3953 DUF3953 RVT-GII GIIM YcaP DUF4046 DUF4046 DUF4046 Feature: gene Location: 25059-25361 bp Feature: gene Location: 25578-25814 bp Feature: domain Description: DUF3953 Location: 25584-25644 bp Feature: domain Description: DUF3953 Location: 25584-25644 bp Feature: domain Description: DUF3953 Location: 25677-25797 bp Feature: domain Description: DUF3953 Location: 25677-25797 bp Feature: gene Location: 26052-27467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26166-26826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 66-26826 bp Feature: domain Description: GIIM Note: maturase Location: 26892-27126 bp Feature: domain Description: GIIM Note: maturase Location: 26892-271 26 bp Feature: gene Location: 28437-29048 bp Feature: domain Description: YcaP Location: 28440-29037 bp Feature: domain Description: YcaP Location: 28440-29037 bp Feature: gene Location: 29589-30329 bp Feature: domain Description: DUF4046 Location: 29607-29796 bp Feature: domain Description: DUF4046 Location: 29607-29796 bp Feature: domain Description: DUF4046 Location: 29877-30048 bp Feature: domain Description: DUF4046 Location: 29877-30048 bp Feature: domain Description: DUF4046 Location: 30111-30276 bp Feature: domain Description: DUF4046 Location: 301 1 1 -30276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3953 (pfam13129), RVT-GII, GIIM (pfam08388), YcaP (COG2323), DUF4046 (pfam13255)

Seq: LVYL01000016.1 Bacillus endophyticus strain 3631_9D plasmid pBEH6 3631_9D_contig_23, whole genome shotgun sequence (64856 bp)
Overview 1 RT 1: 28666-32419 bp Neighborhood of RT #1 [28666, 32419] RVT_N RVT-GII GIIM Feature: gene Location: 28666-28887 bp Feature: gene Location: 29112-29381 bp Feature: gene Location: 29384-30820 bp Feature: RT Description: RVT_N Location: 29492-29738 bp Feature: RT Description: RVT_N Location: 2 9492 -2 9738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29792-30452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9792 -30452 bp Feature: domain Description: GIIM Note: maturase Location: 30518-30725 bp Feature: domain Description: GIIM Note: maturase Location: 30518-3072 5 bp Feature: gene Location: 31701-32207 bp Feature: gene Location: 32231-32419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LVYL01000012.1 Bacillus endophyticus strain 3631_9D 3631_9D_contig_2, whole genome shotgun sequence (38579 bp)
Overview 1 RT 1: 32882-38015 bp Neighborhood of RT #1 [32882, 38065] DUF5412 RVT_N RVT-GII GIIM 2A51 PadR Feature: gene Location: 32882-33193 bp Feature: gene Location: 33623-34048 bp Feature: domain Description: DUF5412 Location: 33632-33983 bp Feature: domain Description: DUF5412 Location: 3 3 63 2-3 3 983 bp Feature: gene Location: 34222-35871 bp Feature: RT Description: RVT_N Location: 34270-34516 bp Feature: RT Description: RVT_N Location: 3 4270-3 4516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34570-35230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4570-3 523 0 bp Feature: domain Description: GIIM Note: maturase Location: 35296-35530 bp Feature: domain Description: GIIM Note: maturase Location: 3 5296-3 553 0 bp Feature: gene Location: 36531-37724 bp Feature: domain Description: 2A51 Location: 36597-37704 bp Feature: domain Description: 2A51 Location: 3 6597-3 7704 bp Feature: gene Location: 37742-38065 bp Feature: domain Description: PadR Location: 37811-38015 bp Feature: domain Description: PadR Location: 3 7811-3 8015 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5412 (pfam17428), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), 2A51 (TIGR00937), PadR (pfam03551)

Seq: LVYL01000050.1 Bacillus endophyticus strain 3631_9D 3631_9D_contig_55, whole genome shotgun sequence (86077 bp)
Overview 1 RT 1: 59129-64346 bp Neighborhood of RT #1 [59129, 64399] DUF3953 DUF3953 RVT-GII GIIM YcaP DUF4046 DUF4046 DUF4046 Feature: gene Location: 59129-59431 bp Feature: gene Location: 59648-59884 bp Feature: domain Description: DUF3953 Location: 59654-59714 bp Feature: domain Description: DUF3953 Location: 59654 -59714 bp Feature: domain Description: DUF3953 Location: 59747-59867 bp Feature: domain Description: DUF3953 Location: 5974 7-59867 bp Feature: gene Location: 60122-61537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60236-60896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60236-60896 bp Feature: domain Description: GIIM Note: maturase Location: 60962-61196 bp Feature: domain Description: GIIM Note: maturase Location: 60962-61196 bp Feature: gene Location: 62507-63118 bp Feature: domain Description: YcaP Location: 62510-63107 bp Feature: domain Description: YcaP Location: 62510-63107 bp Feature: gene Location: 63659-64399 bp Feature: domain Description: DUF4046 Location: 63677-63866 bp Feature: domain Description: DUF4 04 6 Location: 63677-63866 bp Feature: domain Description: DUF4046 Location: 63947-64118 bp Feature: domain Description: DUF4 04 6 Location: 6394 7-64 118 bp Feature: domain Description: DUF4046 Location: 64181-64346 bp Feature: domain Description: DUF4 04 6 Location: 64 181-64 34 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3953 (pfam13129), RVT-GII, GIIM (pfam08388), YcaP (COG2323), DUF4046 (pfam13255)

Seq: LVYL01000052.1 Bacillus endophyticus strain 3631_9D 3631_9D_contig_57, whole genome shotgun sequence (270215 bp)
Overview 1 RT 1: 237059-244286 bp Neighborhood of RT #1 [237059, 244300] DUF3231 DUF3231 FAD_binding_3 RVT-GII Intron_maturas2 HNHc PRK06126 PotE Feature: gene Location: 237059-238054 bp Feature: domain Description: DUF3231 Location: 237065-237536 bp Feature: domain Description: DUF3231 Location: 237065 -2375 36 bp Feature: domain Description: DUF3231 Location: 237563-238046 bp Feature: domain Description: DUF3231 Location: 2375 63-238046 bp Feature: gene Location: 238450-239583 bp Feature: domain Description: FAD_binding_3 Location: 238501-239575 bp Feature: domain Description: FAD_binding_3 Location: 2385 01-2395 75 bp Feature: gene Location: 240175-242007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 240451-241279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24045 1-241279 bp Feature: domain Description: Intron_maturas2 Location: 241357-241687 bp Feature: domain Description: Intron_maturas2 Location: 24135 7-241687 bp Feature: domain Description: HNHc Note: nucleases Location: 241810-241978 bp Feature: domain Description: HNHc Note: nucleases Location: 241810-241978 bp Feature: gene Location: 242094-242666 bp Feature: domain Description: PRK06126 Location: 242193-242631 bp Feature: domain Description: PRK06126 Location: 242193-242631 bp Feature: gene Location: 242960-244300 bp Feature: domain Description: PotE Location: 242984-244286 bp Feature: domain Description: PotE Location: 242984-244286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3231 (pfam11553), FAD_binding_3 (pfam01494), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK06126 (hypothetical protein; Provisional), PotE (COG0531)

Seq: LVYL01000053.1 Bacillus endophyticus strain 3631_9D 3631_9D_contig_6, whole genome shotgun sequence (404642 bp)
Overview 1 RT 1: 116386-122803 bp Neighborhood of RT #1 [116386, 122811] GDPD_GDE4_like_1 MutS2 RVT-GII Intron_maturas2 HNHc yhbS Feature: gene Location: 116386-117378 bp Feature: domain Description: GDPD_GDE4_like_1 Location: 116443-117352 bp Feature: domain Description: GDPD_GDE4_like_1 Location: 116 443-117352 bp Feature: gene Location: 117847-119565 bp Feature: domain Description: MutS2 Location: 117862-119458 bp Feature: domain Description: MutS2 Location: 11786 2-119458 bp Feature: gene Location: 120116-121930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120380-121208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120380-121208 bp Feature: domain Description: Intron_maturas2 Location: 121286-121619 bp Feature: domain Description: Intron_maturas2 Location: 121286 -1216 19 bp Feature: domain Description: HNHc Note: nucleases Location: 121727-121904 bp Feature: domain Description: HNHc Note: nucleases Location: 121727-121904 bp Feature: gene Location: 122050-122277 bp Feature: gene Location: 122284-122811 bp Feature: domain Description: yhbS Location: 122287-122803 bp Feature: domain Description: yhbS Location: 122287-122803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD_GDE4_like_1 (cd08613), MutS2 (COG1193), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), yhbS (COG3153)