myRT

myRT report for GCA_003284585.1_ASM328458v1

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Seq: QKRX01000001.1 Nitrincola tibetensis strain xg18 xg18_scaffold1, whole genome shotgun sequence (498174 bp)
Overview 1 RT 1: 216851-220530 bp Neighborhood of RT #1 [216851, 220530] RVT_N RVT-GII GIIM HNH Feature: gene Location: 216851-217015 bp Feature: gene Location: 217195-217554 bp Feature: gene Location: 217586-219268 bp Feature: RT Description: RVT_N Location: 217637-217880 bp Feature: RT Description: RVT_N Location: 21 7637-21 7880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217925-218570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7925-21 8570 bp Feature: domain Description: GIIM Note: maturase Location: 218621-218855 bp Feature: domain Description: GIIM Note: maturase Location: 21 8621 -21 8855 bp Feature: domain Description: HNH Note: nucleases Location: 219095-219230 bp Feature: domain Description: HNH Note: nucleases Location: 21 9095-21 9230 bp Feature: gene Location: 219274-219456 bp Feature: gene Location: 219508-220530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: QKRX01000029.1 Nitrincola tibetensis strain xg18 xg18_scaffold29, whole genome shotgun sequence (6744 bp)
Overview 1 RT 1: 224-2518 bp Neighborhood of RT #1 [224, 2565] RVT-GII GIIM PRK08118 Feature: gene Location: 224-1462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 8-1085 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1391 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1391 bp Feature: gene Location: 1468-1680 bp Feature: gene Location: 2062-2565 bp Feature: domain Description: PRK08118 Location: 2074-2518 bp Feature: domain Description: PRK08118 Location: 2 074-2 518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08118 (DNA topology modulation protein), RVT-GII, GIIM (pfam08388)

Seq: QKRX01000030.1 Nitrincola tibetensis strain xg18 xg18_scaffold30, whole genome shotgun sequence (5422 bp)
Overview 1 RT 1: 2085-5422 bp Neighborhood of RT #1 [2085, 5421] DUF4062 3beta-17beta-HSD_like_SDR_c RVT-GII Feature: gene Location: 2085-3191 bp Feature: domain Description: DUF4062 Location: 2103-2346 bp Feature: domain Description: DUF4062 Location: 2103 -23 46 bp Feature: gene Location: 3219-4016 bp Feature: domain Description: 3beta-17beta-HSD_like_SDR_c Location: 3225-3990 bp Feature: domain Description: 3 beta-17beta-HSD_like_SDR_c Location: 3 225-3 990 bp Feature: gene Location: 4627-5421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4882-5422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4882-5422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4062 (pfam13271), 3beta-17beta-HSD_like_SDR_c (cd05341), RVT-GII

Seq: QKRX01000045.1 Nitrincola tibetensis strain xg18 xg18_scaffold45, whole genome shotgun sequence (723 bp)
Overview 1 RT 1: 109-637 bp Neighborhood of RT #1 [109, 720] RVT-GII GIIM Feature: gene Location: 109-720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133-352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133-352 bp Feature: domain Description: GIIM Note: maturase Location: 457-637 bp Feature: domain Description: GIIM Note: maturase Location: 4 57-637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QKRX01000005.1 Nitrincola tibetensis strain xg18 xg18_scaffold5, whole genome shotgun sequence (255745 bp)
Overview 1 RT 1: 64744-69580 bp Neighborhood of RT #1 [64744, 69582] InsQ RVT-GII PRK15426 PleD dCache_1 Tar Feature: gene Location: 64744-65082 bp Feature: domain Description: InsQ Location: 64750-65050 bp Feature: domain Description: InsQ Location: 6475 0-65 05 0 bp Feature: gene Location: 65392-65559 bp Feature: gene Location: 65573-65926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65861-65924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 861-65 924 bp Feature: gene Location: 66013-67614 bp Feature: domain Description: PRK15426 Location: 66493-67000 bp Feature: domain Description: PRK15 426 Location: 66493-67000 bp Feature: domain Description: PleD Location: 67081-67609 bp Feature: domain Description: PleD Location: 67081-67609 bp Feature: gene Location: 67702-69582 bp Feature: domain Description: dCache_1 Location: 67801-68476 bp Feature: domain Description: dCache_1 Location: 67801-68476 bp Feature: domain Description: Tar Location: 68479-69580 bp Feature: domain Description: Tar Location: 68479-695 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, PRK15426 (cellulose biosynthesis regulator YedQ), PleD (COG3706), dCache_1 (pfam02743), Tar (COG0840)