myRT

myRT report for GCA_003287575.1_ASM328757v1

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Seq: NSCI01000001.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0001, whole genome shotgun sequence (428433 bp)
Overview 1 RT 1: 256267-260418 bp Neighborhood of RT #1 [256267, 260435] mycothiol_INO1 UDP_G4E_5_SDR_e UDP_G4E_5_SDR_e RVT-GII RVT-GII Y1_Tnp Feature: gene Location: 256267-257358 bp Feature: domain Description: mycothiol_INO1 Location: 256291-257338 bp Feature: domain Description: mycothiol_INO1 Location: 256291 -257338 bp Feature: gene Location: 257567-258421 bp Feature: domain Description: UDP_G4E_5_SDR_e Location: 257579-257666 bp Feature: domain Description: UDP_G4E_5_SDR_e Location: 257579-257666 bp Feature: domain Description: UDP_G4E_5_SDR_e Location: 257690-258389 bp Feature: domain Description: UDP_G4E_5_SDR_e Location: 257690-258389 bp Feature: gene Location: 258516-259532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258789-258987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258789-258987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259038-259215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259038-25921 5 bp Feature: gene Location: 259770-259958 bp Feature: gene Location: 260265-260435 bp Feature: domain Description: Y1_Tnp Location: 260271-260418 bp Feature: domain Description: Y1 _Tnp Location: 260271 -26041 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mycothiol_INO1 (TIGR03450), UDP_G4E_5_SDR_e (cd05264), RVT-GII, Y1_Tnp (pfam01797)

Seq: NSCI01000008.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0008, whole genome shotgun sequence (147588 bp)
Overview 1 RT 1: 93916-95984 bp Neighborhood of RT #1 [93916, 95995] GIIM RVT-GII DDE_Tnp_1_3 Feature: gene Location: 93916-94110 bp Feature: gene Location: 94190-94351 bp Feature: domain Description: GIIM Note: maturase Location: 94229-94346 bp Feature: domain Description: GIIM Note: maturase Location: 942 2 9-94346 bp Feature: gene Location: 94378-95202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94543-95077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94543-95077 bp Feature: gene Location: 95402-95680 bp Feature: gene Location: 95759-95995 bp Feature: domain Description: DDE_Tnp_1_3 Location: 95762-95984 bp Feature: domain Description: DDE_Tnp_1_3 Location: 95762 -95984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, DDE_Tnp_1_3 (pfam13612)

Seq: NSCI01000027.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0027, whole genome shotgun sequence (70490 bp)
Overview 1 RT 1: 55305-61383 bp Neighborhood of RT #1 [55305, 61391] PRK09010 RVT-GII RVT-GII Intron_maturas2 HNHc Trans_IPPS_HH crtI_fam Feature: gene Location: 55305-55556 bp Feature: gene Location: 55626-56162 bp Feature: domain Description: PRK09010 Location: 55629-56160 bp Feature: domain Description: PRK09010 Location: 55629-56160 bp Feature: gene Location: 56770-57216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57058-57214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57058-57214 bp Feature: gene Location: 57310-58674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57316-57895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573 16-57895 bp Feature: domain Description: Intron_maturas2 Location: 58030-58285 bp Feature: domain Description: Intron_maturas2 Location: 5803 0-58285 bp Feature: domain Description: HNHc Note: nucleases Location: 58456-58615 bp Feature: domain Description: HNHc Note: nucleases Location: 58456-58615 bp Feature: gene Location: 58987-59913 bp Feature: domain Description: Trans_IPPS_HH Location: 59011-59809 bp Feature: domain Description: Trans_IPPS_HH Location: 59011-59809 bp Feature: gene Location: 59910-61391 bp Feature: domain Description: crtI_fam Location: 59922-61383 bp Feature: domain Description: crtI_fam Location: 59922-613 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09010 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Trans_IPPS_HH (cd00683), crtI_fam (TIGR02734)

Seq: NSCI01000076.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0076, whole genome shotgun sequence (3307 bp)
Overview 1 RT 1: 2381-3300 bp Neighborhood of RT #1 [2381, 3305] RVT-GII Feature: gene Location: 2381-2518 bp Feature: gene Location: 2583-2852 bp Feature: gene Location: 2937-3305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2943-3300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294 3-3300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NSCI01000099.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0099, whole genome shotgun sequence (649 bp)
Overview 1 RT 1: 3-456 bp Neighborhood of RT #1 [3, 647] RVT-GII Feature: gene Location: 3-647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-45 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII