myRT

myRT report for GCA_003287715.1_ASM328771v1

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Seq: NSCK01000011.1 Photorhabdus sp. S9-53 S9_53_scf0011, whole genome shotgun sequence (128258 bp)
Overview 1 RT 1: 92-3139 bp Neighborhood of RT #1 [92, 3159] DDE_Tnp_1_3 RVT-GII GIIM DDE_Tnp_1_3 PAAR_CT_2 Feature: gene Location: 92-838 bp Feature: domain Description: DDE_Tnp_1_3 Location: 407-827 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 407-827 bp Feature: gene Location: 1296-2615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1572-2226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 572-2226 bp Feature: domain Description: GIIM Note: maturase Location: 2310-2523 bp Feature: domain Description: GIIM Note: maturase Location: 231 0-2523 bp Feature: gene Location: 2698-2862 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2704-2749 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 2704-2749 bp Feature: gene Location: 2884-3159 bp Feature: domain Description: PAAR_CT_2 Location: 2905-3139 bp Feature: domain Description: PAAR_CT_2 Location: 2905-31 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT-GII, GIIM (pfam08388), PAAR_CT_2 (cd14744)

Seq: NSCK01000022.1 Photorhabdus sp. S9-53 S9_53_scf0022, whole genome shotgun sequence (75969 bp)
Overview 1 RT 1: 29060-34924 bp Neighborhood of RT #1 [29060, 35529] PRK06846 DDE_Tnp_1_3 RVT-GII GIIM DDE_Tnp_1_3 Peptidases_S8_Subtilisin_like_2 Feature: gene Location: 29060-29653 bp Feature: domain Description: PRK06846 Location: 29258-29645 bp Feature: domain Description: PRK06846 Location: 2 92 58-2 9645 bp Feature: gene Location: 30205-30441 bp Feature: domain Description: DDE_Tnp_1_3 Location: 30274-30328 bp Feature: domain Description: DDE_Tnp_1_3 Location: 302 74-3032 8 bp Feature: gene Location: 30452-31660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30617-31271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30617-312 71 bp Feature: domain Description: GIIM Note: maturase Location: 31355-31568 bp Feature: domain Description: GIIM Note: maturase Location: 31355-31568 bp Feature: gene Location: 32232-32978 bp Feature: domain Description: DDE_Tnp_1_3 Location: 32547-32967 bp Feature: domain Description: DDE_Tnp_1_3 Location: 32 547-32 967 bp Feature: gene Location: 33325-35529 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 34147-34924 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 34147-3492 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06846 (putative deaminase; Validated), DDE_Tnp_1_3 (pfam13612), RVT-GII, GIIM (pfam08388), Peptidases_S8_Subtilisin_like_2 (cd04847)

Seq: NSCK01000027.1 Photorhabdus sp. S9-53 S9_53_scf0027, whole genome shotgun sequence (61631 bp)
Overview 1 RT 1: 2815-5903 bp Neighborhood of RT #1 [2815, 5903] ERK-JNK_inhib RVT-GII Feature: gene Location: 2815-3375 bp Feature: gene Location: 3814-4032 bp Feature: domain Description: ERK-JNK_inhib Location: 3835-3976 bp Feature: domain Description: ERK-JNK_inhib Location: 3 83 5-3 976 bp Feature: gene Location: 4408-5358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471-4981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4471-4981 bp Feature: gene Location: 5414-5641 bp Feature: gene Location: 5688-5903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ERK-JNK_inhib (pfam15002), RVT-GII

Seq: NSCK01000054.1 Photorhabdus sp. S9-53 S9_53_scf0054, whole genome shotgun sequence (28873 bp)
Overview 1 RT 1: 2179-6116 bp Neighborhood of RT #1 [2179, 6116] MdlB ABCC_Protease_Secretion RVT-GII GIIM Feature: gene Location: 2179-2574 bp Feature: domain Description: MdlB Location: 2206-2515 bp Feature: domain Description: MdlB Location: 2206-2515 bp Feature: gene Location: 2708-3106 bp Feature: domain Description: ABCC_Protease_Secretion Location: 2765-3092 bp Feature: domain Description: ABCC_Protease_Secretion Location: 2765-3092 bp Feature: gene Location: 3866-5128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4070-4727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 070-4 727 bp Feature: domain Description: GIIM Note: maturase Location: 4808-5012 bp Feature: domain Description: GIIM Note: maturase Location: 4 808-5012 bp Feature: gene Location: 5125-5460 bp Feature: gene Location: 5907-6116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), ABCC_Protease_Secretion (cd03246), RVT-GII, GIIM (pfam08388)

Seq: NSCK01000087.1 Photorhabdus sp. S9-53 S9_53_scf0087, whole genome shotgun sequence (4919 bp)
Overview 1 RT 1: 2348-4885 bp Neighborhood of RT #1 [2348, 4917] INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII Feature: gene Location: 2348-3322 bp Feature: domain Description: INT_RitB_C_like Location: 2675-3263 bp Feature: domain Description: INT_RitB_C_like Location: 2675 -3263 bp Feature: gene Location: 3322-4383 bp Feature: domain Description: Phage_int_SAM_4 Location: 3505-3730 bp Feature: domain Description: Phage_int_SAM_4 Location: 35 05 -3730 bp Feature: domain Description: INT_RitA_C_like Location: 3826-4366 bp Feature: domain Description: INT_RitA_C_like Location: 3826-4366 bp Feature: gene Location: 4693-4917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4699-4885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4699-4885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), RVT-GII

Seq: NSCK01000110.1 Photorhabdus sp. S9-53 S9_53_scf0110, whole genome shotgun sequence (2951 bp)
Overview 1 RT 1: 418-2950 bp Neighborhood of RT #1 [418, 2950] DDE_Tnp_1_3 RVT-GII Feature: gene Location: 418-1164 bp Feature: domain Description: DDE_Tnp_1_3 Location: 730-1153 bp Feature: domain Description: DDE_Tnp_1_3 Location: 730-1153 bp Feature: gene Location: 1244-1741 bp Feature: gene Location: 1625-2095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1901-1976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1901-1976 bp Feature: gene Location: 2765-2950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT-GII

Seq: NSCK01000140.1 Photorhabdus sp. S9-53 S9_53_scf0140, whole genome shotgun sequence (1520 bp)
Overview 1 RT 1: 3-1382 bp Neighborhood of RT #1 [3, 1402] RVT-GII COG3547 Feature: gene Location: 3-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-495 bp Feature: gene Location: 1016-1402 bp Feature: domain Description: COG3547 Location: 1031-1382 bp Feature: domain Description: COG3547 Location: 1031-1382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase )

Seq: NSCK01000153.1 Photorhabdus sp. S9-53 S9_53_scf0153, whole genome shotgun sequence (1097 bp)
Overview 1 RT 1: 8-1090 bp Neighborhood of RT #1 [8, 1095] RVT-GII Feature: gene Location: 8-166 bp Feature: gene Location: 219-614 bp Feature: gene Location: 394-1095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778-1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 778 -1090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII