myRT

myRT report for GCA_003287735.1_ASM328773v1

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Seq: NSCM01000002.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0002, whole genome shotgun sequence (321158 bp)
Overview 1 RT 1: 2-3051 bp Neighborhood of RT #1 [2, 3051] ParE RVT-GII GIIM Feature: gene Location: 2-142 bp Feature: gene Location: 319-552 bp Feature: domain Description: ParE Location: 328-544 bp Feature: domain Description: ParE Location: 328-544 bp Feature: gene Location: 1201-1800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1264-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 264-1 549 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1786 bp Feature: domain Description: GIIM Note: maturase Location: 1 633-1 786 bp Feature: gene Location: 1818-2048 bp Feature: gene Location: 2671-3051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), RVT-GII, GIIM (pfam08388)

Seq: NSCM01000003.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0003, whole genome shotgun sequence (238868 bp)
Overview 1 RT 1: 235730-238864 bp Neighborhood of RT #1 [235730, 238866] DDE_Tnp_1_3 group_II_RT_mat RVT-GII GIIM RVT-GII Feature: gene Location: 235730-236476 bp Feature: domain Description: DDE_Tnp_1_3 Location: 236042-236465 bp Feature: domain Description: DDE_Tnp_1_3 Location: 2 36042 -2 36465 bp Feature: gene Location: 236889-237230 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 237048-237204 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 37048-2 372 04 bp Feature: gene Location: 237739-238299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237763-237910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 37763-2 37910 bp Feature: domain Description: GIIM Note: maturase Location: 237994-238207 bp Feature: domain Description: GIIM Note: maturase Location: 2 37994-2 382 07 bp Feature: gene Location: 238387-238866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238489-238864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 38489-2 38864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: NSCM01000023.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0023, whole genome shotgun sequence (63915 bp)
Overview 1 RT 1: 2585-6928 bp Neighborhood of RT #1 [2585, 7104] Arm-DNA-bind_3 INT_P4_C RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 2585-3022 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2618-2819 bp Feature: domain Description: Arm-DNA-bind_3 Location: 2618-2819 bp Feature: gene Location: 3263-3610 bp Feature: domain Description: INT_P4_C Location: 3269-3530 bp Feature: domain Description: INT_P4_C Location: 3 269-3 53 0 bp Feature: gene Location: 3864-4799 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3966-4566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 966-4566 bp Feature: gene Location: 4796-6457 bp Feature: domain Description: COG3950 Location: 4991-6416 bp Feature: domain Description: COG3 950 Location: 4991-6416 bp Feature: gene Location: 6454-7104 bp Feature: domain Description: TIGR02646 Location: 6517-6928 bp Feature: domain Description: TIGR02646 Location: 6517-6928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NSCM01000062.1 Photorhabdus bodei strain LJ24-63 LJ_63_scf0062, whole genome shotgun sequence (16050 bp)
Overview 1 RT 1: 11292-16022 bp Neighborhood of RT #1 [11292, 16048] MATE_NorM_like GIIM RVT-GII GIIM RVT-GII RVT-GII Feature: gene Location: 11292-12677 bp Feature: domain Description: MATE_NorM_like Location: 11322-12630 bp Feature: domain Description: MATE_NorM_like Location: 11322-12630 bp Feature: gene Location: 12937-13347 bp Feature: domain Description: GIIM Note: maturase Location: 12976-13189 bp Feature: domain Description: GIIM Note: maturase Location: 12976-13189 bp Feature: gene Location: 13649-14272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13658-13874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13658-13874 bp Feature: domain Description: GIIM Note: maturase Location: 13955-14174 bp Feature: domain Description: GIIM Note: maturase Location: 13955-14 174 bp Feature: gene Location: 14280-15059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14634-15009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 634 -15009 bp Feature: gene Location: 14978-15343 bp Feature: gene Location: 15437-16048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15539-16022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15539-16022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_NorM_like (cd13137), GIIM (pfam08388), RVT-GII