myRT

myRT report for GCA_003288945.1_ASM328894v1

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Seq: NHYV01000016.1 Escherichia coli strain 1608190053 NODE_16_length_147689_cov_10.8283, whole genome shotgun sequence (147689 bp)
Overview 1 RT 1: 78642-82583 bp Neighborhood of RT #1 [78642, 82583] RVT-Retrons Feature: gene Location: 78642-78881 bp Feature: gene Location: 79188-79364 bp Feature: gene Location: 79437-81209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79596-80214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79596-8021 4 bp Feature: gene Location: 81231-81398 bp Feature: gene Location: 81444-82583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NHYV01000055.1 Escherichia coli strain 1608190053 NODE_55_length_11849_cov_11.4186, whole genome shotgun sequence (11849 bp)
Overview 1 RT 1: 440-4684 bp Neighborhood of RT #1 [440, 4684] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 440-1342 bp Feature: domain Description: Macro_Appr_pase Location: 458-971 bp Feature: domain Description: Macro_Appr_pase Location: 458-971 bp Feature: gene Location: 1351-1935 bp Feature: domain Description: Caudo_TAP Location: 1567-1924 bp Feature: domain Description: Caudo_TAP Location: 1567-192 4 bp Feature: gene Location: 2048-3418 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2276-2882 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 2 76-2 882 bp Feature: gene Location: 3396-4100 bp Feature: domain Description: SLATT_5 Location: 3558-4068 bp Feature: domain Description: SLATT_5 Location: 3558-4068 bp Feature: gene Location: 4508-4684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: NHYV01000079.1 Escherichia coli strain 1608190053 NODE_79_length_3636_cov_15.6268, whole genome shotgun sequence (3636 bp)
Overview 1 RT 1: 81-3634 bp Neighborhood of RT #1 [81, 3634] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 81-323 bp Feature: domain Description: PRK13732 Location: 87-309 bp Feature: domain Description: PRK13 73 2 Location: 87-3 09 bp Feature: gene Location: 518-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1616 bp Feature: domain Description: Intron_maturas2 Location: 1730-1988 bp Feature: domain Description: Intron_maturas2 Location: 173 0-1988 bp Feature: domain Description: HNHc Note: nucleases Location: 2162-2324 bp Feature: domain Description: HNHc Note: nucleases Location: 2162-23 24 bp Feature: gene Location: 3097-3303 bp Feature: gene Location: 3305-3634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NHYV01000090.1 Escherichia coli strain 1608190053 NODE_90_length_2468_cov_13.1034, whole genome shotgun sequence (2468 bp)
Overview 1 RT 1: 3-2034 bp Neighborhood of RT #1 [3, 2279] PHA02517 RVT-GII GIIM Feature: gene Location: 3-164 bp Feature: domain Description: PHA02517 Location: 9-99 bp Feature: domain Description: PHA02517 Location: 9-99 bp Feature: gene Location: 756-2279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1836-2034 bp Feature: domain Description: GIIM Note: maturase Location: 1836-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)