myRT

myRT report for GCA_003288975.1_ASM328897v1

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Seq: NHYY01000014.1 Escherichia coli strain 1408220042 NODE_14_length_127828_cov_14.9979, whole genome shotgun sequence (127828 bp)
Overview 1 RT 1: 58781-62722 bp Neighborhood of RT #1 [58781, 62722] RVT-Retrons Feature: gene Location: 58781-59020 bp Feature: gene Location: 59327-59503 bp Feature: gene Location: 59576-61348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59735-60353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59735-60353 bp Feature: gene Location: 61370-61537 bp Feature: gene Location: 61583-62722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: NHYY01000050.1 Escherichia coli strain 1408220042 NODE_50_length_11849_cov_14.9763, whole genome shotgun sequence (11849 bp)
Overview 1 RT 1: 7166-11039 bp Neighborhood of RT #1 [7166, 11410] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7166-7342 bp Feature: gene Location: 7750-8454 bp Feature: domain Description: SLATT_5 Location: 7912-8422 bp Feature: domain Description: SLATT_5 Location: 7912 -842 2 bp Feature: gene Location: 8432-9802 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8660-9266 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8660-92 66 bp Feature: gene Location: 9915-10499 bp Feature: domain Description: Caudo_TAP Location: 10131-10488 bp Feature: domain Description: Caudo_TAP Location: 10131-10488 bp Feature: gene Location: 10508-11410 bp Feature: domain Description: Macro_Appr_pase Location: 10526-11039 bp Feature: domain Description: Macro_Appr_pase Location: 1052 6-11039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: NHYY01000072.1 Escherichia coli strain 1408220042 NODE_72_length_3636_cov_20.6842, whole genome shotgun sequence (3636 bp)
Overview 1 RT 1: 81-3634 bp Neighborhood of RT #1 [81, 3634] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 81-323 bp Feature: domain Description: PRK13732 Location: 87-309 bp Feature: domain Description: PRK13 73 2 Location: 87-3 09 bp Feature: gene Location: 518-2419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1616 bp Feature: domain Description: Intron_maturas2 Location: 1730-1988 bp Feature: domain Description: Intron_maturas2 Location: 173 0-1988 bp Feature: domain Description: HNHc Note: nucleases Location: 2162-2324 bp Feature: domain Description: HNHc Note: nucleases Location: 2162-23 24 bp Feature: gene Location: 3097-3303 bp Feature: gene Location: 3305-3634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: NHYY01000084.1 Escherichia coli strain 1408220042 NODE_84_length_2468_cov_17.2837, whole genome shotgun sequence (2468 bp)
Overview 1 RT 1: 3-2034 bp Neighborhood of RT #1 [3, 2279] PHA02517 RVT-GII GIIM Feature: gene Location: 3-164 bp Feature: domain Description: PHA02517 Location: 9-99 bp Feature: domain Description: PHA02517 Location: 9-99 bp Feature: gene Location: 756-2279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1836-2034 bp Feature: domain Description: GIIM Note: maturase Location: 1836-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)