myRT

myRT report for GCA_003290625.1_ASM329062v1

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Seq: PJFO01000105.1 Escherichia coli strain SC29 NODE_105_length_2544_cov_925.743, whole genome shotgun sequence (2544 bp)
Overview 1 RT 1: 93-2543 bp Neighborhood of RT #1 [93, 2543] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 93-1760 bp Feature: domain Description: RVT_N Location: 141-378 bp Feature: domain Description: RVT_N Location: 1 41 -378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 071 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 22-1 356 bp Feature: domain Description: HNHc Note: nucleases Location: 1566-1725 bp Feature: domain Description: HNHc Note: nucleases Location: 1 566-1 725 bp Feature: gene Location: 2040-2222 bp Feature: gene Location: 2334-2543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: PJFO01000007.1 Escherichia coli strain SC29 NODE_7_length_169260_cov_89.297, whole genome shotgun sequence (169260 bp)
Overview 1 RT 1: 66879-72915 bp Neighborhood of RT #1 [66879, 72932] PRK09692 RVT-UG5 nitrilase Psu Feature: gene Location: 66879-67103 bp Feature: gene Location: 67248-68504 bp Feature: domain Description: PRK09692 Location: 67257-68460 bp Feature: domain Description: PRK09692 Location: 672 57-68460 bp Feature: gene Location: 68596-71472 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 69070-69598 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 69070-69598 bp Feature: domain Description: nitrilase Location: 70810-71392 bp Feature: domain Description: nitrilase Location: 70810-71392 bp Feature: gene Location: 71469-72158 bp Feature: gene Location: 72360-72932 bp Feature: domain Description: Psu Location: 72378-72915 bp Feature: domain Description: Psu Location: 72 378-72 915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, nitrilase (cl11424), Psu (pfam07455)

Seq: PJFO01000086.1 Escherichia coli strain SC29 NODE_86_length_4177_cov_8756.94, whole genome shotgun sequence (4177 bp)
Overview 1 RT 1: 1987-4176 bp Neighborhood of RT #1 [1987, 4176] RVT-Retrons CspC Feature: gene Location: 1987-2142 bp Feature: gene Location: 2232-2414 bp Feature: gene Location: 2436-3575 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2580-3135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2580-3 13 5 bp Feature: gene Location: 3580-3783 bp Feature: domain Description: CspC Location: 3583-3778 bp Feature: domain Description: CspC Location: 3 583 -3 778 bp Feature: gene Location: 3982-4176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278)