myRT

myRT report for GCA_003290755.1_ASM329075v1

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Seq: PJFU01000019.1 Escherichia coli strain 3150 NODE_19_length_86532_cov_74.4883, whole genome shotgun sequence (86532 bp)
Overview 1 RT 1: 29372-37059 bp Neighborhood of RT #1 [29372, 37064] DUF5405 Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 29372-29647 bp Feature: domain Description: DUF5405 Location: 29390-29630 bp Feature: domain Description: DUF5405 Location: 29390-29630 bp Feature: gene Location: 29775-31922 bp Feature: domain Description: Phage_GPA Location: 30036-31023 bp Feature: domain Description: Phage_GPA Location: 30036-31 023 bp Feature: gene Location: 32026-33573 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 32443-32896 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 32443-32896 bp Feature: gene Location: 33572-33742 bp Feature: gene Location: 33752-33898 bp Feature: gene Location: 33900-34040 bp Feature: gene Location: 34108-35298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34258-34840 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34258-34840 bp Feature: gene Location: 35295-36002 bp Feature: gene Location: 36045-37064 bp Feature: domain Description: Q Location: 36048-37059 bp Feature: domain Description: Q Location: 36048-37059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: PJFU01000099.1 Escherichia coli strain 3150 NODE_99_length_3662_cov_89.1738, whole genome shotgun sequence (3662 bp)
Overview 1 RT 1: 63-3424 bp Neighborhood of RT #1 [63, 3424] PHA02517 RVT-GII GIIM Feature: gene Location: 63-215 bp Feature: gene Location: 408-812 bp Feature: domain Description: PHA02517 Location: 411-801 bp Feature: domain Description: PHA02 517 Location: 411-801 bp Feature: gene Location: 977-2500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1250-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 50-1982 bp Feature: domain Description: GIIM Note: maturase Location: 2057-2255 bp Feature: domain Description: GIIM Note: maturase Location: 2 057-2 2 55 bp Feature: gene Location: 2794-3231 bp Feature: gene Location: 3236-3424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)