myRT

myRT report for GCA_003291015.1_ASM329101v1

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Seq: PJGU01000120.1 Escherichia coli strain JL39 NODE_120_length_2306_cov_212.3, whole genome shotgun sequence (2306 bp)
Overview 1 RT 1: 93-2305 bp Neighborhood of RT #1 [93, 2305] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PJGU01000001.1 Escherichia coli strain JL39 NODE_1_length_330900_cov_104.578, whole genome shotgun sequence (330900 bp)
Overview 1 RT 1: 59974-62847 bp Neighborhood of RT #1 [59974, 62894] YhhI YhhI YhhI RVT-GII RVT-GII DDE_Tnp_1_assoc Feature: gene Location: 59974-60162 bp Feature: domain Description: YhhI Location: 59983-60145 bp Feature: domain Description: YhhI Location: 59983-60145 bp Feature: gene Location: 60165-60443 bp Feature: domain Description: YhhI Location: 60177-60300 bp Feature: domain Description: YhhI Location: 60177-60300 bp Feature: domain Description: YhhI Location: 60300-60384 bp Feature: domain Description: YhhI Location: 60300-60384 bp Feature: gene Location: 61129-61314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61138-61291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61138-612 91 bp Feature: gene Location: 61715-61936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61880-61925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61880-6192 5 bp Feature: gene Location: 62059-62301 bp Feature: gene Location: 62667-62894 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 62682-62847 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 62 682 -62 847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, DDE_Tnp_1_assoc (pfam13808)

Seq: PJGU01000081.1 Escherichia coli strain JL39 NODE_81_length_8754_cov_84.5267, whole genome shotgun sequence (8754 bp)
Overview 1 RT 1: 1038-8399 bp Neighborhood of RT #1 [1038, 8494] PAAR_2 RhsA RHS_repeat RHS_repeat RHS_repeat RHS_repeat RhsA RVT-GII GIIM Feature: gene Location: 1038-5258 bp Feature: domain Description: PAAR_2 Location: 1044-1125 bp Feature: domain Description: PAAR_2 Location: 1044-1125 bp Feature: domain Description: RhsA Location: 1623-2052 bp Feature: domain Description: RhsA Location: 1623 -2052 bp Feature: domain Description: RHS_repeat Location: 2133-2223 bp Feature: domain Description: RHS_repeat Location: 213 3 -2223 bp Feature: domain Description: RHS_repeat Location: 2277-2370 bp Feature: domain Description: RHS_repeat Location: 2277-23 70 bp Feature: domain Description: RHS_repeat Location: 2403-2496 bp Feature: domain Description: RHS_repeat Location: 2403 -2496 bp Feature: domain Description: RHS_repeat Location: 2517-2634 bp Feature: domain Description: RHS_repeat Location: 2517-263 4 bp Feature: domain Description: RhsA Location: 2655-4824 bp Feature: domain Description: RhsA Location: 2655-4824 bp Feature: gene Location: 6272-6646 bp Feature: gene Location: 6995-8494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7448-8105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7448-8105 bp Feature: domain Description: GIIM Note: maturase Location: 8189-8399 bp Feature: domain Description: GIIM Note: maturase Location: 8189-83 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), RVT-GII, GIIM (pfam08388)