myRT

myRT report for GCA_003291185.1_ASM329118v1

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Seq: PJHK01000018.1 Escherichia coli strain 3468 NODE_18_length_105255_cov_100.12, whole genome shotgun sequence (105255 bp)
Overview 1 RT 1: 53843-57725 bp Neighborhood of RT #1 [53843, 57730] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 53843-54559 bp Feature: domain Description: rph Location: 53846-54554 bp Feature: domain Description: rph Location: 53846-54554 bp Feature: gene Location: 54610-55266 bp Feature: domain Description: pyrE Location: 54628-55261 bp Feature: domain Description: pyrE Location: 54628-55261 bp Feature: gene Location: 55564-56523 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55699-56248 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55699-56248 bp Feature: gene Location: 56569-57165 bp Feature: domain Description: slmA Location: 56575-57151 bp Feature: domain Description: slmA Location: 56575-571 51 bp Feature: gene Location: 57272-57730 bp Feature: domain Description: dut Location: 57278-57725 bp Feature: domain Description: dut Location: 57278-57725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: PJHK01000056.1 Escherichia coli strain 3468 NODE_56_length_8062_cov_75.6312, whole genome shotgun sequence (8062 bp)
Overview 1 RT 1: 2322-6322 bp Neighborhood of RT #1 [2322, 6330] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2322-3683 bp Feature: domain Description: DcuC Location: 2325-3657 bp Feature: domain Description: DcuC Location: 2 32 5-3657 bp Feature: gene Location: 3736-4107 bp Feature: gene Location: 4329-4775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4635-4737 bp Feature: gene Location: 4823-4972 bp Feature: gene Location: 5299-6330 bp Feature: domain Description: Asparaginase_2 Location: 5389-6322 bp Feature: domain Description: Asparaginase_2 Location: 5389-632 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: PJHK01000065.1 Escherichia coli strain 3468 NODE_65_length_5730_cov_18.773, whole genome shotgun sequence (5730 bp)
Overview 1 RT 1: 675-5108 bp Neighborhood of RT #1 [675, 5108] DUF3560 AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 675-2036 bp Feature: domain Description: DUF3560 Location: 942-1299 bp Feature: domain Description: DUF3 560 Location: 942-1299 bp Feature: gene Location: 2083-2646 bp Feature: domain Description: AdoMet_MTases Location: 2245-2545 bp Feature: domain Description: AdoMet_MTases Location: 2245-2545 bp Feature: gene Location: 2979-4646 bp Feature: RT Description: RVT_N Location: 3027-3264 bp Feature: RT Description: RVT_N Location: 3 027-3 264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3315-3957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 15-3 957 bp Feature: domain Description: GIIM Note: maturase Location: 4008-4242 bp Feature: domain Description: GIIM Note: maturase Location: 4008-4242 bp Feature: domain Description: HNHc Note: nucleases Location: 4452-4611 bp Feature: domain Description: HNHc Note: nucleases Location: 4452-4611 bp Feature: gene Location: 4683-4829 bp Feature: gene Location: 4926-5108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF3560 (pfam12083)

Seq: PJHK01000076.1 Escherichia coli strain 3468 NODE_76_length_4177_cov_269.21, whole genome shotgun sequence (4177 bp)
Overview 1 RT 1: 2819-3967 bp Neighborhood of RT #1 [2819, 4176] RVT-Retrons Feature: gene Location: 2819-2974 bp Feature: gene Location: 3064-3246 bp Feature: gene Location: 3268-4176 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3412-3967 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34 12-3967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons