myRT

myRT report for GCA_003291365.1_ASM329136v1

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Seq: PJHZ01000031.1 Escherichia coli strain 2680 NODE_31_length_52990_cov_109.154, whole genome shotgun sequence (52990 bp)
Overview 1 RT 1: 50217-52926 bp Neighborhood of RT #1 [50217, 52931] PRK10597 SLATT_5 RVT-UG17 InsA Feature: gene Location: 50217-50465 bp Feature: domain Description: PRK10597 Location: 50220-50460 bp Feature: domain Description: PRK1 0597 Location: 50220-50460 bp Feature: gene Location: 50688-51239 bp Feature: domain Description: SLATT_5 Location: 50694-51210 bp Feature: domain Description: SLATT_5 Location: 50694-51 21 0 bp Feature: gene Location: 51217-52587 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 51445-52051 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 51 445-52051 bp Feature: gene Location: 52656-52931 bp Feature: domain Description: InsA Location: 52659-52926 bp Feature: domain Description: InsA Location: 52659-52926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), SLATT_5 (pfam18160), RVT-UG17, InsA (COG3677)

Seq: PJHZ01000053.1 Escherichia coli strain 2680 NODE_53_length_24299_cov_83.9263, whole genome shotgun sequence (24299 bp)
Overview 1 RT 1: 11003-14482 bp Neighborhood of RT #1 [11003, 14547] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 11003-11209 bp Feature: gene Location: 11384-11788 bp Feature: domain Description: PHA02517 Location: 11387-11777 bp Feature: domain Description: PHA02 517 Location: 11387-11777 bp Feature: gene Location: 11953-13299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12049-12781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 049-12 781 bp Feature: domain Description: GIIM Note: maturase Location: 12856-13054 bp Feature: domain Description: GIIM Note: maturase Location: 12 856-13054 bp Feature: gene Location: 13430-13855 bp Feature: gene Location: 14068-14547 bp Feature: domain Description: PHA02517 Location: 14128-14482 bp Feature: domain Description: PHA02 517 Location: 1412 8-14482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PJHZ01000056.1 Escherichia coli strain 2680 NODE_56_length_17745_cov_127.219, whole genome shotgun sequence (17745 bp)
Overview 1 RT 1: 14380-17742 bp Neighborhood of RT #1 [14380, 17742] AfaD-like zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII RVT-GII Feature: gene Location: 14380-14829 bp Feature: domain Description: AfaD-like Location: 14476-14815 bp Feature: domain Description: AfaD-like Location: 14476-14815 bp Feature: gene Location: 14947-15924 bp Feature: domain Description: zf-ISL3 Location: 15079-15205 bp Feature: domain Description: zf-ISL3 Location: 15079-15205 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 15223-15370 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 15223 -153 70 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15421-15895 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15421-15895 bp Feature: gene Location: 15964-16644 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15970-16126 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 15970-16126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16504-16642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16504-16642 bp Feature: gene Location: 16981-17310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16984-17194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16984-17194 bp Feature: gene Location: 17371-17742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AfaD-like (cd18776), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII

Seq: PJHZ01000065.1 Escherichia coli strain 2680 NODE_65_length_11153_cov_138.826, whole genome shotgun sequence (11153 bp)
Overview 1 RT 1: 26-3182 bp Neighborhood of RT #1 [26, 3199] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 26-403 bp Feature: domain Description: DDE_Tnp_IS1 Location: 29-401 bp Feature: domain Description: DDE_Tnp_IS1 Location: 29-4 01 bp Feature: gene Location: 448-723 bp Feature: domain Description: InsA Location: 451-715 bp Feature: domain Description: InsA Location: 4 51-715 bp Feature: gene Location: 875-1885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-14 93 bp Feature: gene Location: 1997-2362 bp Feature: gene Location: 2387-3199 bp Feature: domain Description: PRK10276 Location: 2819-3182 bp Feature: domain Description: PRK10276 Location: 2819-3182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: PJHZ01000087.1 Escherichia coli strain 2680 NODE_87_length_4203_cov_7785.9, whole genome shotgun sequence (4203 bp)
Overview 1 RT 1: 70-1861 bp Neighborhood of RT #1 [70, 1861] RVT-Retrons Feature: gene Location: 70-1194 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214-769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214-769 bp Feature: gene Location: 1216-1398 bp Feature: gene Location: 1637-1861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons