myRT

myRT report for GCA_003292195.1_ASM329219v1

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Seq: NRTE01000089.1 Escherichia coli strain A141 NODE_122_length_3050_cov_133.844, whole genome shotgun sequence (3050 bp)
Overview 1 RT 1: 304-2770 bp Neighborhood of RT #1 [304, 2895] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 304-1971 bp Feature: RT Description: RVT_N Location: 352-589 bp Feature: RT Description: RVT_N Location: 352-589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640-1 282 bp Feature: domain Description: GIIM Note: maturase Location: 1333-1567 bp Feature: domain Description: GIIM Note: maturase Location: 1 333-1 567 bp Feature: domain Description: HNHc Note: nucleases Location: 1777-1936 bp Feature: domain Description: HNHc Note: nucleases Location: 1 777-1 936 bp Feature: gene Location: 2473-2895 bp Feature: domain Description: DUF1380 Location: 2476-2770 bp Feature: domain Description: DUF1 380 Location: 2476-2770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NRTE01000009.1 Escherichia coli strain A141 NODE_27_length_54797_cov_75.8478, whole genome shotgun sequence (54797 bp)
Overview 1 RT 1: 50105-54785 bp Neighborhood of RT #1 [50105, 54796] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 50105-51691 bp Feature: domain Description: prfC Location: 50123-51689 bp Feature: domain Description: prfC Location: 5012 3-51689 bp Feature: gene Location: 51911-52171 bp Feature: domain Description: PRK10597 Location: 51914-52154 bp Feature: domain Description: PRK10597 Location: 51914-52 154 bp Feature: gene Location: 52529-54133 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52820-53411 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 82 0-53411 bp Feature: domain Description: TIR_2 Location: 53738-54071 bp Feature: domain Description: TIR_2 Location: 53738-54071 bp Feature: gene Location: 54578-54796 bp Feature: domain Description: Caudo_TAP Location: 54590-54785 bp Feature: domain Description: Caudo_TAP Location: 54590-54785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)

Seq: NRTE01000052.1 Escherichia coli strain A141 NODE_50_length_22800_cov_63.2206, whole genome shotgun sequence (22800 bp)
Overview 1 RT 1: 4316-9895 bp Neighborhood of RT #1 [4316, 9895] Inovirus_Gp2 RVT-GII Feature: gene Location: 4316-6139 bp Feature: gene Location: 7341-7904 bp Feature: domain Description: Inovirus_Gp2 Location: 7398-7839 bp Feature: domain Description: Inovirus_Gp2 Location: 73 98-783 9 bp Feature: gene Location: 8230-9393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8344-9031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 44-903 1 bp Feature: gene Location: 9380-9688 bp Feature: gene Location: 9722-9895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-GII

Seq: NRTE01000261.1 Escherichia coli strain A141 NODE_81_length_6913_cov_167.544, whole genome shotgun sequence (6913 bp)
Overview 1 RT 1: 1-2299 bp Neighborhood of RT #1 [1, 2299] RVT-GII GIIM Feature: gene Location: 1-138 bp Feature: gene Location: 200-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 88-1106 bp Feature: domain Description: GIIM Note: maturase Location: 1154-1385 bp Feature: domain Description: GIIM Note: maturase Location: 1154 -1385 bp Feature: gene Location: 1595-1792 bp Feature: gene Location: 2156-2299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NRTE01000230.1 Escherichia coli strain A141 NODE_90_length_5594_cov_112.026, whole genome shotgun sequence (5594 bp)
Overview 1 RT 1: 320-1921 bp Neighborhood of RT #1 [320, 1921] RVT-GII group_II_RT_mat Feature: gene Location: 320-796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323-716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323-716 bp Feature: gene Location: 672-1328 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 834-993 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 834-993 bp Feature: gene Location: 1550-1921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)