myRT

myRT report for GCA_003292315.1_ASM329231v1

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Seq: NRTL01000086.1 Escherichia coli strain B54 NODE_181_length_259_cov_1.05625, whole genome shotgun sequence (259 bp)
Overview 1 RT 1: 1-238 bp Neighborhood of RT #1 [1, 258] RVT-GII Feature: gene Location: 1-258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NRTL01000024.1 Escherichia coli strain B54 NODE_20_length_64569_cov_29.4634, whole genome shotgun sequence (64569 bp)
Overview 1 RT 1: 48368-52511 bp Neighborhood of RT #1 [48368, 52633] PRK13732 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 48368-48895 bp Feature: domain Description: PRK13732 Location: 48371-48893 bp Feature: domain Description: PRK13732 Location: 48371-48893 bp Feature: gene Location: 49016-49363 bp Feature: gene Location: 50077-51744 bp Feature: RT Description: RVT_N Location: 50125-50362 bp Feature: RT Description: RVT_N Location: 5012 5-50362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50413-51055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50413-51055 bp Feature: domain Description: GIIM Note: maturase Location: 51106-51340 bp Feature: domain Description: GIIM Note: maturase Location: 51106-51340 bp Feature: domain Description: HNHc Note: nucleases Location: 51550-51709 bp Feature: domain Description: HNHc Note: nucleases Location: 51550-51709 bp Feature: gene Location: 51857-52159 bp Feature: gene Location: 52211-52633 bp Feature: domain Description: DUF1380 Location: 52214-52511 bp Feature: domain Description: DUF1380 Location: 52 2 14-52 511 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: NRTL01000140.1 Escherichia coli strain B54 NODE_8_length_209187_cov_66.1123, whole genome shotgun sequence (209187 bp)
Overview 1 RT 1: 47722-51604 bp Neighborhood of RT #1 [47722, 51609] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47722-48180 bp Feature: domain Description: dut Location: 47728-48175 bp Feature: domain Description: dut Location: 47728-48175 bp Feature: gene Location: 48287-48883 bp Feature: domain Description: slmA Location: 48293-48869 bp Feature: domain Description: slmA Location: 48293 -48869 bp Feature: gene Location: 48929-49888 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49064-49613 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49064-49613 bp Feature: gene Location: 50186-50842 bp Feature: domain Description: pyrE Location: 50204-50837 bp Feature: domain Description: pyrE Location: 50204-5083 7 bp Feature: gene Location: 50893-51609 bp Feature: domain Description: rph Location: 50896-51604 bp Feature: domain Description: rph Location: 50896-51604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)