myRT

myRT report for GCA_003292875.1_ASM329287v1

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Seq: NRUR01000194.1 Escherichia coli strain A39 NODE_130_length_2826_cov_81.6109, whole genome shotgun sequence (2826 bp)
Overview 1 RT 1: 135-2487 bp Neighborhood of RT #1 [135, 2732] PHA02517 RVT-GII GIIM Feature: gene Location: 135-617 bp Feature: domain Description: PHA02517 Location: 198-552 bp Feature: domain Description: PHA0251 7 Location: 1 98-552 bp Feature: gene Location: 1209-2732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482-2214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 482-221 4 bp Feature: domain Description: GIIM Note: maturase Location: 2289-2487 bp Feature: domain Description: GIIM Note: maturase Location: 2289-2487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: NRUR01000368.1 Escherichia coli strain A39 NODE_34_length_50893_cov_74.1271, whole genome shotgun sequence (50893 bp)
Overview 1 RT 1: 45094-50773 bp Neighborhood of RT #1 [45094, 50892] prfC SLATT_5 RVT-UG17 Caudo_TAP Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 45094-46680 bp Feature: domain Description: prfC Location: 45112-46678 bp Feature: domain Description: prfC Location: 45112 -46678 bp Feature: gene Location: 47211-47915 bp Feature: domain Description: SLATT_5 Location: 47373-47883 bp Feature: domain Description: SLATT_5 Location: 47373-47883 bp Feature: gene Location: 47893-49263 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 48121-48727 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4812 1-4872 7 bp Feature: gene Location: 49376-49960 bp Feature: domain Description: Caudo_TAP Location: 49592-49949 bp Feature: domain Description: Caudo_TAP Location: 49592 -49949 bp Feature: gene Location: 49960-50892 bp Feature: domain Description: Collar Location: 50260-50398 bp Feature: domain Description: Collar Location: 502 60-50398 bp Feature: domain Description: Phage_fiber Location: 50449-50488 bp Feature: domain Description: Phage_fiber Location: 50449-50488 bp Feature: domain Description: Phage_fiber Location: 50545-50584 bp Feature: domain Description: Phage_fiber Location: 50545-50584 bp Feature: domain Description: Phage_fiber Location: 50590-50620 bp Feature: domain Description: Phage_fiber Location: 50590-5062 0 bp Feature: domain Description: Phage_fiber Location: 50695-50734 bp Feature: domain Description: Phage_fiber Location: 50695-50734 bp Feature: domain Description: Phage_fiber Location: 50740-50773 bp Feature: domain Description: Phage_fiber Location: 50740-50773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: NRUR01000229.1 Escherichia coli strain A39 NODE_58_length_15823_cov_75.0602, whole genome shotgun sequence (15823 bp)
Overview 1 RT 1: 3210-6921 bp Neighborhood of RT #1 [3210, 6921] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 3210-4241 bp Feature: domain Description: LacI Location: 3252-3387 bp Feature: domain Description: LacI Location: 3 252-3 3 87 bp Feature: domain Description: PBP1_GntR Location: 3426-4236 bp Feature: domain Description: PBP1_GntR Location: 3 426-423 6 bp Feature: gene Location: 4372-4590 bp Feature: gene Location: 4768-5619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4771-5179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4771-5179 bp Feature: domain Description: GIIM Note: maturase Location: 5227-5452 bp Feature: domain Description: GIIM Note: maturase Location: 5227-5452 bp Feature: gene Location: 5592-6026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5784-6000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5784-6000 bp Feature: gene Location: 6195-6392 bp Feature: gene Location: 6751-6921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)

Seq: NRUR01000270.1 Escherichia coli strain A39 NODE_70_length_9868_cov_25.8182, whole genome shotgun sequence (9868 bp)
Overview 1 RT 1: 1358-5794 bp Neighborhood of RT #1 [1358, 5802] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 1358-1735 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1361-1733 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1361-1733 bp Feature: gene Location: 1780-2055 bp Feature: domain Description: InsA Location: 1783-2047 bp Feature: domain Description: InsA Location: 1783-204 7 bp Feature: gene Location: 2207-3694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2612-3302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2612-3302 bp Feature: gene Location: 3848-4531 bp Feature: domain Description: PRK10276 Location: 4151-4514 bp Feature: domain Description: PRK10276 Location: 4 151-4 514 bp Feature: gene Location: 4531-5802 bp Feature: domain Description: umuC Location: 4534-5794 bp Feature: domain Description: umuC Location: 4 534 -5794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)