myRT

myRT report for GCA_003293125.1_ASM329312v1

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Seq: NRVI01000017.1 Escherichia coli strain A93 NODE_12_length_147056_cov_71.0516, whole genome shotgun sequence (147056 bp)
Overview 1 RT 1: 89619-97306 bp Neighborhood of RT #1 [89619, 97311] DUF5405 Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 89619-89894 bp Feature: domain Description: DUF5405 Location: 89637-89877 bp Feature: domain Description: DUF5405 Location: 89637-89877 bp Feature: gene Location: 90022-92169 bp Feature: domain Description: Phage_GPA Location: 90283-91270 bp Feature: domain Description: Phage_GPA Location: 90283-91 270 bp Feature: gene Location: 92273-93820 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 92690-93143 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 92690-931 43 bp Feature: gene Location: 93819-93989 bp Feature: gene Location: 93999-94145 bp Feature: gene Location: 94147-94287 bp Feature: gene Location: 94355-95545 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94505-95087 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94505-95087 bp Feature: gene Location: 95542-96249 bp Feature: gene Location: 96292-97311 bp Feature: domain Description: Q Location: 96295-97306 bp Feature: domain Description: Q Location: 96295-97306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: NRVI01000088.1 Escherichia coli strain A93 NODE_78_length_3706_cov_87.0801, whole genome shotgun sequence (3706 bp)
Overview 1 RT 1: 168-3622 bp Neighborhood of RT #1 [168, 3622] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 168-593 bp Feature: domain Description: PHA02517 Location: 192-528 bp Feature: domain Description: PHA02 517 Location: 192 -52 8 bp Feature: gene Location: 1185-2708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458-2190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1458-2 190 bp Feature: domain Description: GIIM Note: maturase Location: 2265-2463 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 65-2 463 bp Feature: gene Location: 2873-3277 bp Feature: domain Description: PHA02517 Location: 2876-3266 bp Feature: domain Description: PHA02 517 Location: 2 876-32 66 bp Feature: gene Location: 3470-3622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)