myRT

myRT report for GCA_003293255.1_ASM329325v1

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Seq: NRVR01000095.1 Escherichia coli strain A48 NODE_32_length_60233_cov_59.0549, whole genome shotgun sequence (60233 bp)
Overview 1 RT 1: 15040-20970 bp Neighborhood of RT #1 [15040, 21155] AAA_23 SMC_prok_A RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 15040-16866 bp Feature: domain Description: AAA_23 Location: 15094-15829 bp Feature: domain Description: AAA_23 Location: 1 5094-1 5829 bp Feature: domain Description: SMC_prok_A Location: 16072-16390 bp Feature: domain Description: SMC_prok_A Location: 1 6072-1 6390 bp Feature: gene Location: 17034-17495 bp Feature: gene Location: 17918-18853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18020-18620 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 8020-1 8620 bp Feature: gene Location: 18850-20502 bp Feature: domain Description: COG3950 Location: 19048-20464 bp Feature: domain Description: COG3950 Location: 1 9048-20464 bp Feature: gene Location: 20505-21155 bp Feature: domain Description: TIGR02646 Location: 20571-20970 bp Feature: domain Description: TIGR02646 Location: 20571 -20970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), SMC_prok_A (TIGR02169), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: NRVR01000164.1 Escherichia coli strain A48 NODE_75_length_11318_cov_92.7985, whole genome shotgun sequence (11318 bp)
Overview 1 RT 1: 222-3611 bp Neighborhood of RT #1 [222, 3685] PHA02517 RVT-GII GIIM PHA02517 Acetyltransf_7 Feature: gene Location: 222-647 bp Feature: domain Description: PHA02517 Location: 246-582 bp Feature: domain Description: PHA02 517 Location: 2 46-582 bp Feature: gene Location: 1239-2762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1512-2244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1512 -2 2 44 bp Feature: domain Description: GIIM Note: maturase Location: 2319-2517 bp Feature: domain Description: GIIM Note: maturase Location: 2 319-2 517 bp Feature: gene Location: 2939-3319 bp Feature: domain Description: PHA02517 Location: 2942-3311 bp Feature: domain Description: PHA02 517 Location: 2 942 -3311 bp Feature: gene Location: 3431-3685 bp Feature: domain Description: Acetyltransf_7 Location: 3458-3611 bp Feature: domain Description: Acetyltransf_7 Location: 3458-3611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Acetyltransf_7 (pfam13508)