myRT

myRT report for GCA_003293435.1_ASM329343v1

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Seq: NRVA01000055.1 Escherichia coli strain A248 NODE_55_length_12812_cov_25.6114, whole genome shotgun sequence (12812 bp)
Overview 1 RT 1: 2389-7029 bp Neighborhood of RT #1 [2389, 7061] HTH_38 Tra8 PHA02517 RVT-GII GIIM TraH Feature: gene Location: 2389-3396 bp Feature: domain Description: HTH_38 Location: 2398-2512 bp Feature: domain Description: HTH_38 Location: 2398-251 2 bp Feature: domain Description: Tra8 Location: 2548-3394 bp Feature: domain Description: Tra8 Location: 2548-3394 bp Feature: gene Location: 3527-3952 bp Feature: domain Description: PHA02517 Location: 3551-3887 bp Feature: domain Description: PHA0251 7 Location: 3551 -3887 bp Feature: gene Location: 4544-6067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4817-5549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 7-5549 bp Feature: domain Description: GIIM Note: maturase Location: 5624-5822 bp Feature: domain Description: GIIM Note: maturase Location: 5624-5822 bp Feature: gene Location: 6154-6339 bp Feature: gene Location: 6612-7061 bp Feature: domain Description: TraH Location: 6711-7029 bp Feature: domain Description: TraH Location: 671 1 -7029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), TraH (pfam06122)

Seq: NRVA01000066.1 Escherichia coli strain A248 NODE_66_length_7629_cov_25.5663, whole genome shotgun sequence (7629 bp)
Overview 1 RT 1: 404-3177 bp Neighborhood of RT #1 [404, 3177] RAYT RVT-GII GIIM RVT-GII Feature: gene Location: 404-1021 bp Feature: domain Description: RAYT Location: 560-923 bp Feature: domain Description: RAYT Location: 560-92 3 bp Feature: gene Location: 1096-1791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1351 bp Feature: domain Description: GIIM Note: maturase Location: 1399-1630 bp Feature: domain Description: GIIM Note: maturase Location: 1399-1630 bp Feature: gene Location: 1798-2442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2086-2437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 086-2 437 bp Feature: gene Location: 2473-2670 bp Feature: gene Location: 3034-3177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, GIIM (pfam08388)

Seq: NRVA01000068.1 Escherichia coli strain A248 NODE_68_length_5931_cov_14.2085, whole genome shotgun sequence (5931 bp)
Overview 1 RT 1: 783-5643 bp Neighborhood of RT #1 [783, 5690] Tnp_22_trimer Transposase_22 Tnp_22_dsRBD L1-EN RVT-UNC DUF1725 Feature: gene Location: 783-1172 bp Feature: domain Description: Tnp_22_trimer Location: 1113-1170 bp Feature: domain Description: Tnp_22_trimer Location: 1113 -1170 bp Feature: gene Location: 1239-1799 bp Feature: domain Description: Transposase_22 Location: 1248-1539 bp Feature: domain Description: Transposase_22 Location: 1248-153 9 bp Feature: domain Description: Tnp_22_dsRBD Location: 1548-1740 bp Feature: domain Description: Tnp_22_dsRBD Location: 1548-1740 bp Feature: gene Location: 1863-5690 bp Feature: domain Description: L1-EN Location: 1893-2574 bp Feature: domain Description: L1-EN Location: 1893 -2574 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3447-4104 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3 447-4104 bp Feature: domain Description: DUF1725 Location: 5589-5643 bp Feature: domain Description: DUF1725 Location: 5589-5643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tnp_22_trimer (pfam17489), Transposase_22 (pfam02994), Tnp_22_dsRBD (pfam17490), L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), DUF1725 (pfam08333)