myRT

myRT report for GCA_003293445.1_ASM329344v1

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Seq: NRVG01000118.1 Escherichia coli strain A190 NODE_4_length_265285_cov_69.2878, whole genome shotgun sequence (265285 bp)
Overview 1 RT 1: 244409-250971 bp Neighborhood of RT #1 [244409, 250979] DUF5405 Phage_GPA RVT-Retrons ABC_ATPase Q Feature: gene Location: 244409-244684 bp Feature: domain Description: DUF5405 Location: 244427-244667 bp Feature: domain Description: DUF5405 Location: 244427-244667 bp Feature: gene Location: 244674-246944 bp Feature: domain Description: Phage_GPA Location: 245073-246060 bp Feature: domain Description: Phage_GPA Location: 245073-246060 bp Feature: gene Location: 247271-248260 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247388-247949 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 247388-247949 bp Feature: gene Location: 248262-249614 bp Feature: domain Description: ABC_ATPase Location: 248322-249045 bp Feature: domain Description: ABC_ATPase Location: 248322-249045 bp Feature: gene Location: 249945-250979 bp Feature: domain Description: Q Location: 249948-250971 bp Feature: domain Description: Q Location: 249948-250971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, ABC_ATPase (pfam09818), Q (PHA02536)

Seq: NRVG01000030.1 Escherichia coli strain A190 NODE_96_length_2977_cov_70.0973, whole genome shotgun sequence (2977 bp)
Overview 1 RT 1: 1-2976 bp Neighborhood of RT #1 [1, 2975] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-534 bp Feature: domain Description: PHA02517 Location: 115-469 bp Feature: domain Description: PHA02 517 Location: 115-469 bp Feature: gene Location: 1126-2649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1399-2131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1399-2 131 bp Feature: domain Description: GIIM Note: maturase Location: 2206-2404 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 06-2 404 bp Feature: gene Location: 2766-2975 bp Feature: domain Description: PHA02517 Location: 2769-2976 bp Feature: domain Description: PHA02 517 Location: 2 769-2 976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)