myRT

myRT report for GCA_003297615.1_ASM329761v1

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Seq: BGQD01000030.1 Escherichia coli TUM18542 DNA, sequence030, whole genome shotgun sequence (50183 bp)
Overview 1 RT 1: 49099-50020 bp Neighborhood of RT #1 [49099, 50181] PRK10173 PRK10173 RVT-GII Feature: gene Location: 49099-49548 bp Feature: domain Description: PRK10173 Location: 49102-49540 bp Feature: domain Description: PRK1 01 73 Location: 491 02-49540 bp Feature: gene Location: 49532-49843 bp Feature: domain Description: PRK10173 Location: 49535-49754 bp Feature: domain Description: PRK1 01 73 Location: 49535-49754 bp Feature: gene Location: 49882-50181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49951-50020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49951 -50020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: BGQD01000044.1 Escherichia coli TUM18542 DNA, sequence044, whole genome shotgun sequence (32208 bp)
Overview 1 RT 1: 29176-32204 bp Neighborhood of RT #1 [29176, 32206] HTH_29 HTH_33 DDE_3 RVT-AbiP2 PRK09183 Feature: gene Location: 29176-29466 bp Feature: gene Location: 29476-30537 bp Feature: domain Description: HTH_29 Location: 29596-29767 bp Feature: domain Description: HTH_2 9 Location: 2 9596-2 9767 bp Feature: domain Description: HTH_33 Location: 29800-29962 bp Feature: domain Description: HTH_33 Location: 2 9800-2 9962 bp Feature: domain Description: DDE_3 Location: 30004-30433 bp Feature: domain Description: DDE_3 Location: 30004-30433 bp Feature: gene Location: 30639-32009 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 30900-31356 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 30900-31356 bp Feature: gene Location: 32048-32206 bp Feature: domain Description: PRK09183 Location: 32051-32204 bp Feature: domain Description: PRK09183 Location: 32 051-32 2 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2, PRK09183 (transposase/IS protein; Provisional)

Seq: BGQD01000077.1 Escherichia coli TUM18542 DNA, sequence077, whole genome shotgun sequence (4048 bp)
Overview 1 RT 1: 3-2188 bp Neighborhood of RT #1 [3, 2922] RVT-GII rve Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-3 3 0 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1423-2922 bp Feature: domain Description: rve Location: 1795-2188 bp Feature: domain Description: rve Location: 1795-2188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rve (pfam00665)

Seq: BGQD01000079.1 Escherichia coli TUM18542 DNA, sequence079, whole genome shotgun sequence (3776 bp)
Overview 1 RT 1: 3-2190 bp Neighborhood of RT #1 [3, 2228] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1439-1795 bp Feature: domain Description: PHA02517 Location: 1442-1751 bp Feature: domain Description: PHA02517 Location: 14 4 2-1751 bp Feature: gene Location: 1824-2228 bp Feature: domain Description: InsE Location: 1854-2190 bp Feature: domain Description: InsE Location: 1854 -2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)