myRT

myRT report for GCA_003297875.1_ASM329787v1

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Seq: BGQJ01000002.1 Escherichia coli TUM18548 DNA, sequence002, whole genome shotgun sequence (251057 bp)
Overview 1 RT 1: 17158-20127 bp Neighborhood of RT #1 [17158, 20192] RVT-GII GIIM PHA02517 Feature: gene Location: 17158-17301 bp Feature: gene Location: 17326-17511 bp Feature: gene Location: 17598-19121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17871-18603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7871 -1 8603 bp Feature: domain Description: GIIM Note: maturase Location: 18678-18876 bp Feature: domain Description: GIIM Note: maturase Location: 1 8678-1 8876 bp Feature: gene Location: 19075-19500 bp Feature: gene Location: 19713-20192 bp Feature: domain Description: PHA02517 Location: 19773-20127 bp Feature: domain Description: PHA0251 7 Location: 1 9773-201 27 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: BGQJ01000067.1 Escherichia coli TUM18548 DNA, sequence067, whole genome shotgun sequence (9301 bp)
Overview 1 RT 1: 5238-9244 bp Neighborhood of RT #1 [5238, 9300] DUF5405 Phage_GPA RVT-Retrons FepC Feature: gene Location: 5238-5513 bp Feature: domain Description: DUF5405 Location: 5256-5496 bp Feature: domain Description: DUF5405 Location: 52 56-5496 bp Feature: gene Location: 5461-7773 bp Feature: domain Description: Phage_GPA Location: 5902-6889 bp Feature: domain Description: Phage_GPA Location: 5902 -6889 bp Feature: gene Location: 8100-9089 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8217-8778 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82 17-8778 bp Feature: gene Location: 9091-9300 bp Feature: domain Description: FepC Location: 9103-9244 bp Feature: domain Description: FepC Location: 9103-92 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-Retrons, FepC (COG1120)