myRT

myRT report for GCA_003298685.1_ASM329868v1

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Seq: QNRB01000016.1 Escherichia coli strain FP3 NODE_16_length_44215_cov_149.577, whole genome shotgun sequence (44215 bp)
Overview 1 RT 1: 36940-43770 bp Neighborhood of RT #1 [36940, 44213] PRK01271 YhhI YhhI PAAR_2 RhsA RHS_repeat RhsA RhsA YD_repeat_2x RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core RVT-GII GIIM VgrG Feature: gene Location: 36940-37167 bp Feature: domain Description: PRK01271 Location: 36943-37165 bp Feature: domain Description: PRK01 271 Location: 36943-371 65 bp Feature: gene Location: 37200-37991 bp Feature: domain Description: YhhI Location: 37203-37566 bp Feature: domain Description: YhhI Location: 37203-37566 bp Feature: domain Description: YhhI Location: 37623-37974 bp Feature: domain Description: YhhI Location: 37623-37974 bp Feature: gene Location: 38198-43465 bp Feature: domain Description: PAAR_2 Location: 38204-38285 bp Feature: domain Description: PAAR_2 Location: 38204-38285 bp Feature: domain Description: RhsA Location: 38783-39230 bp Feature: domain Description: RhsA Location: 38783-39230 bp Feature: domain Description: RHS_repeat Location: 39293-39383 bp Feature: domain Description: RHS_repeat Location: 39293-39383 bp Feature: domain Description: RhsA Location: 39452-39788 bp Feature: domain Description: RhsA Location: 39452-39788 bp Feature: domain Description: RhsA Location: 39815-40067 bp Feature: domain Description: RhsA Location: 3981 5-40067 bp Feature: domain Description: YD_repeat_2x Location: 40124-40241 bp Feature: domain Description: YD_repeat_2x Location: 401 24-40241 bp Feature: domain Description: RHS_repeat Location: 40247-40346 bp Feature: domain Description: RHS_repeat Location: 40247-40346 bp Feature: domain Description: RHS_repeat Location: 40685-40772 bp Feature: domain Description: RHS_repeat Location: 40685-40772 bp Feature: domain Description: RHS_repeat Location: 40916-40973 bp Feature: domain Description: RHS_repeat Location: 4091 6-40973 bp Feature: domain Description: Rhs_assc_core Location: 41618-41849 bp Feature: domain Description: Rhs_assc_core Location: 41 61 8-41 849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42419-43076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4241 9-43076 bp Feature: domain Description: GIIM Note: maturase Location: 43160-43370 bp Feature: domain Description: GIIM Note: maturase Location: 431 60-43370 bp Feature: gene Location: 43533-44213 bp Feature: domain Description: VgrG Location: 43539-43770 bp Feature: domain Description: VgrG Location: 43539-43770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01271 (tautomerase PptA), YhhI (COG5433), PAAR_2 (cd14738), RhsA (COG3209), RHS_repeat (pfam05593), YD_repeat_2x (TIGR01643), Rhs_assc_core (TIGR03696), RVT-GII, GIIM (pfam08388), VgrG (COG3501)

Seq: QNRB01000024.1 Escherichia coli strain FP3 NODE_24_length_19133_cov_480.027, whole genome shotgun sequence (19133 bp)
Overview 1 RT 1: 338-3365 bp Neighborhood of RT #1 [338, 3466] RVT-GII GIIM zf-IS66 DDE_Tnp_IS66 LZ_Tnp_IS66 Feature: gene Location: 338-1570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 539-1193 bp Feature: domain Description: GIIM Note: maturase Location: 1271-1490 bp Feature: domain Description: GIIM Note: maturase Location: 12 71-1490 bp Feature: gene Location: 2032-3222 bp Feature: domain Description: zf-IS66 Location: 2215-2299 bp Feature: domain Description: zf-IS66 Location: 2 2 15-2 2 99 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2344-3181 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 344-3181 bp Feature: gene Location: 3002-3466 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3140-3365 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3140-3365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), LZ_Tnp_IS66 (pfam13007), RVT-GII, GIIM (pfam08388)

Seq: QNRB01000006.1 Escherichia coli strain FP3 NODE_6_length_329481_cov_170.717, whole genome shotgun sequence (329481 bp)
Overview 1 RT 1: 283897-288549 bp Neighborhood of RT #1 [283897, 288549] YdfG HTH_1 PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 283897-284619 bp Feature: domain Description: YdfG Location: 283903-284611 bp Feature: domain Description: YdfG Location: 283 903 -284611 bp Feature: gene Location: 284718-285617 bp Feature: domain Description: HTH_1 Location: 284733-284910 bp Feature: domain Description: HTH_1 Location: 28473 3 -284910 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 284988-285591 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 284988-285591 bp Feature: gene Location: 286486-287418 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 286588-287179 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 286588-287179 bp Feature: gene Location: 287405-288373 bp Feature: gene Location: 288406-288549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdfG (COG4221), HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), RVT-Retrons