myRT

myRT report for GCA_003301995.1_ASM330199v1

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Seq: NRXC01000172.1 Escherichia coli strain A8 NODE_110_length_2206_cov_1019.51, whole genome shotgun sequence (2206 bp)
Overview 1 RT 1: 1-1869 bp Neighborhood of RT #1 [1, 2114] RVT-GII GIIM Feature: gene Location: 1-297 bp Feature: gene Location: 591-2114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 864-1 596 bp Feature: domain Description: GIIM Note: maturase Location: 1671-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1 671 -1 869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NRXC01000087.1 Escherichia coli strain A8 NODE_23_length_77305_cov_81.778, whole genome shotgun sequence (77305 bp)
Overview 1 RT 1: 899-4369 bp Neighborhood of RT #1 [899, 4476] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 899-1201 bp Feature: domain Description: Arm-DNA-bind_3 Location: 908-1160 bp Feature: domain Description: Arm-DNA-bind_3 Location: 908-1160 bp Feature: gene Location: 1385-1630 bp Feature: gene Location: 1656-2588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1758-2352 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1758-2 352 bp Feature: gene Location: 2590-3576 bp Feature: gene Location: 4204-4476 bp Feature: domain Description: PRK09678 Location: 4213-4369 bp Feature: domain Description: PRK09678 Location: 42 13-4369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: NRXC01000064.1 Escherichia coli strain A8 NODE_71_length_10265_cov_72.0354, whole genome shotgun sequence (10265 bp)
Overview 1 RT 1: 2-5728 bp Neighborhood of RT #1 [2, 5728] DDE_Tnp_IS1 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 2-166 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5-164 bp Feature: domain Description: DDE_Tnp_IS1 Location: 5-164 bp Feature: gene Location: 464-2740 bp Feature: domain Description: AAA_15 Location: 497-1505 bp Feature: domain Description: AAA_15 Location: 497-1505 bp Feature: gene Location: 2855-3955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3038-3566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 03 8-3 566 bp Feature: gene Location: 4611-5480 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 5133-5304 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 513 3 -53 04 bp Feature: gene Location: 5477-5728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), AAA_15 (pfam13175)