myRT

myRT report for GCA_003302265.1_ASM330226v1

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Seq: NRXT01000142.1 Escherichia coli strain A367 NODE_29_length_44511_cov_76.4051, whole genome shotgun sequence (44511 bp)
Overview 1 RT 1: 12323-14811 bp Neighborhood of RT #1 [12323, 14876] RVT-GII group_II_RT_mat Inovirus_Gp2 Feature: gene Location: 12323-12496 bp Feature: gene Location: 12530-12838 bp Feature: gene Location: 12825-13502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12939-13491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2939-1 3491 bp Feature: gene Location: 13520-13987 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 13580-13886 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 3580-1 3886 bp Feature: gene Location: 14313-14876 bp Feature: domain Description: Inovirus_Gp2 Location: 14370-14811 bp Feature: domain Description: Inovirus_Gp2 Location: 1 4370-1 481 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), Inovirus_Gp2 (pfam11726)

Seq: NRXT01000082.1 Escherichia coli strain A367 NODE_2_length_287885_cov_77.0809, whole genome shotgun sequence (287885 bp)
Overview 1 RT 1: 258989-264223 bp Neighborhood of RT #1 [258989, 264294] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 258989-260575 bp Feature: domain Description: prfC Location: 259007-260573 bp Feature: domain Description: prfC Location: 2 59007-2 60573 bp Feature: gene Location: 260795-261055 bp Feature: domain Description: PRK10597 Location: 260798-261038 bp Feature: domain Description: PRK10597 Location: 2 60798-2 61038 bp Feature: gene Location: 261413-263017 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 261704-262295 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 61704-2 62 2 95 bp Feature: domain Description: TIR_2 Location: 262622-262955 bp Feature: domain Description: TIR_2 Location: 2 62 62 2 -2 62 955 bp Feature: gene Location: 263462-264046 bp Feature: domain Description: Caudo_TAP Location: 263678-264035 bp Feature: domain Description: Caudo_TAP Location: 2 63678-2 64035 bp Feature: gene Location: 264046-264294 bp Feature: domain Description: Phage_fiber Location: 264097-264136 bp Feature: domain Description: Phage_fiber Location: 2 64097-2 64136 bp Feature: domain Description: Phage_fiber Location: 264142-264172 bp Feature: domain Description: Phage_fiber Location: 2 64142 -2 64172 bp Feature: domain Description: Phage_fiber Location: 264196-264223 bp Feature: domain Description: Phage_fiber Location: 2 64196-2 642 2 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), Phage_fiber (pfam03335)

Seq: NRXT01000073.1 Escherichia coli strain A367 NODE_51_length_13971_cov_83.1584, whole genome shotgun sequence (13971 bp)
Overview 1 RT 1: 7131-10664 bp Neighborhood of RT #1 [7131, 10669] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 7131-7475 bp Feature: gene Location: 7487-7684 bp Feature: gene Location: 7853-8287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8045-8261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8045-8261 bp Feature: gene Location: 8260-8913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8263-8671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8263 -8671 bp Feature: domain Description: GIIM Note: maturase Location: 8719-8911 bp Feature: domain Description: GIIM Note: maturase Location: 8719-8911 bp Feature: gene Location: 9289-9507 bp Feature: gene Location: 9638-10669 bp Feature: domain Description: LacI Location: 9680-9815 bp Feature: domain Description: LacI Location: 9680-9815 bp Feature: domain Description: PBP1_GntR Location: 9854-10664 bp Feature: domain Description: PBP1_GntR Location: 9854-10664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)