myRT

myRT report for GCA_003302365.1_ASM330236v1

Download annotations/find similar RTs

Seq: NRXW01000043.1 Escherichia coli strain A337 NODE_28_length_50921_cov_62.083, whole genome shotgun sequence (50921 bp)
Overview 1 RT 1: 48272-50915 bp Neighborhood of RT #1 [48272, 50920] SLATT_5 RVT-UG17 bZIP_CREB1 Feature: gene Location: 48272-48412 bp Feature: gene Location: 48425-48976 bp Feature: domain Description: SLATT_5 Location: 48431-48947 bp Feature: domain Description: SLATT_5 Location: 48431 -48947 bp Feature: gene Location: 48954-50324 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 49182-49788 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 491 82-49788 bp Feature: gene Location: 50405-50737 bp Feature: gene Location: 50762-50920 bp Feature: domain Description: bZIP_CREB1 Location: 50834-50915 bp Feature: domain Description: bZIP_CREB1 Location: 50834-5091 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, bZIP_CREB1 (cd14690)

Seq: NRXW01000113.1 Escherichia coli strain A337 NODE_41_length_30719_cov_59.3529, whole genome shotgun sequence (30719 bp)
Overview 1 RT 1: 21629-28876 bp Neighborhood of RT #1 [21629, 28896] proA PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 21629-22882 bp Feature: domain Description: proA Location: 21656-22847 bp Feature: domain Description: proA Location: 2 1656-2 2 847 bp Feature: gene Location: 23236-24414 bp Feature: domain Description: PRK09692 Location: 23242-24400 bp Feature: domain Description: PRK09692 Location: 2 32 42 -2 4400 bp Feature: gene Location: 24416-25612 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 24701-25163 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 4701-2 5163 bp Feature: gene Location: 25616-27619 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 26111-26558 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 6111-2 6558 bp Feature: gene Location: 28068-28340 bp Feature: domain Description: PRK09678 Location: 28077-28245 bp Feature: domain Description: PRK09678 Location: 2 8077-2 82 45 bp Feature: gene Location: 28342-28896 bp Feature: domain Description: Psu Location: 28366-28876 bp Feature: domain Description: Psu Location: 2 8366-2 8876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)

Seq: NRXW01000024.1 Escherichia coli strain A337 NODE_58_length_10304_cov_65.2829, whole genome shotgun sequence (10304 bp)
Overview 1 RT 1: 3-5852 bp Neighborhood of RT #1 [3, 5852] PRK11447 RAYT RVT-GII GIIM Feature: gene Location: 3-2729 bp Feature: domain Description: PRK11447 Location: 6-2730 bp Feature: domain Description: PRK11447 Location: 6-273 0 bp Feature: gene Location: 3076-3615 bp Feature: domain Description: RAYT Location: 3154-3517 bp Feature: domain Description: RAYT Location: 3 154-3 517 bp Feature: gene Location: 3771-5117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4059-4677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4059-4677 bp Feature: domain Description: GIIM Note: maturase Location: 4725-4956 bp Feature: domain Description: GIIM Note: maturase Location: 4725-4956 bp Feature: gene Location: 5148-5345 bp Feature: gene Location: 5709-5852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11447 (cellulose synthase subunit BcsC; Provisional), RAYT (COG1943), RVT-GII, GIIM (pfam08388)