myRT

myRT report for GCA_003302465.1_ASM330246v1

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Seq: NRYH01000148.1 Escherichia coli strain A409 NODE_1_length_374662_cov_71.2156, whole genome shotgun sequence (374662 bp)
Overview 1 RT 1: 137079-139499 bp Neighborhood of RT #1 [137079, 139499] RVT-Retrons HTH_XRE Feature: gene Location: 137079-137273 bp Feature: gene Location: 137272-137709 bp Feature: gene Location: 137834-138784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138014-138557 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 3801 4-1 38557 bp Feature: gene Location: 138762-139082 bp Feature: domain Description: HTH_XRE Location: 138786-138951 bp Feature: domain Description: HTH_XRE Location: 1 38786-1 38951 bp Feature: gene Location: 139107-139499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: NRYH01000066.1 Escherichia coli strain A409 NODE_3_length_319170_cov_83.3316, whole genome shotgun sequence (319170 bp)
Overview 1 RT 1: 51214-60290 bp Neighborhood of RT #1 [51214, 60292] Ail_Lom phage_tail_N Peptidase_S74 APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 51214-51813 bp Feature: domain Description: Ail_Lom Location: 51217-51811 bp Feature: domain Description: Ail_Lom Location: 512 17-51811 bp Feature: gene Location: 51878-55636 bp Feature: domain Description: phage_tail_N Location: 51881-52280 bp Feature: domain Description: phage_tail_N Location: 51881-52 2 80 bp Feature: domain Description: Peptidase_S74 Location: 55205-55352 bp Feature: domain Description: Peptidase_S74 Location: 552 05-55352 bp Feature: domain Description: APC_N_CC Location: 55505-55628 bp Feature: domain Description: APC_N_CC Location: 55505-5562 8 bp Feature: gene Location: 56264-57868 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56555-57146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56555-57146 bp Feature: domain Description: TIR_2 Location: 57473-57806 bp Feature: domain Description: TIR_2 Location: 57473-57806 bp Feature: gene Location: 58226-58486 bp Feature: domain Description: PRK10597 Location: 58229-58469 bp Feature: domain Description: PRK10597 Location: 582 2 9-58469 bp Feature: gene Location: 58706-60292 bp Feature: domain Description: prfC Location: 58724-60290 bp Feature: domain Description: prfC Location: 5872 4-602 90 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ail_Lom (pfam06316), phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: NRYH01000005.1 Escherichia coli strain A409 NODE_66_length_8147_cov_89.5045, whole genome shotgun sequence (8147 bp)
Overview 1 RT 1: 4435-7324 bp Neighborhood of RT #1 [4435, 7324] RVT-GII GIIM RVT-GII Feature: gene Location: 4435-4653 bp Feature: gene Location: 4696-4866 bp Feature: gene Location: 5029-5682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5032-5440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 503 2-5440 bp Feature: domain Description: GIIM Note: maturase Location: 5488-5680 bp Feature: domain Description: GIIM Note: maturase Location: 5488-5680 bp Feature: gene Location: 5655-6089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5847-6063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5847-6063 bp Feature: gene Location: 6258-6455 bp Feature: gene Location: 6998-7324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NRYH01000112.1 Escherichia coli strain A409 NODE_83_length_4443_cov_81.2723, whole genome shotgun sequence (4443 bp)
Overview 1 RT 1: 190-2665 bp Neighborhood of RT #1 [190, 2730] RVT-GII GIIM PHA02517 Feature: gene Location: 190-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 63-1195 bp Feature: domain Description: GIIM Note: maturase Location: 1270-1468 bp Feature: domain Description: GIIM Note: maturase Location: 1270-14 68 bp Feature: gene Location: 1667-2092 bp Feature: gene Location: 2305-2730 bp Feature: domain Description: PHA02517 Location: 2329-2665 bp Feature: domain Description: PHA02517 Location: 2329-2665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)