myRT

myRT report for GCA_003303105.1_ASM330310v1

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Seq: NRZI01000004.1 Escherichia coli strain A154 NODE_12_length_140995_cov_87.861, whole genome shotgun sequence (140995 bp)
Overview 1 RT 1: 49355-53238 bp Neighborhood of RT #1 [49355, 53243] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49355-49813 bp Feature: domain Description: dut Location: 49361-49808 bp Feature: domain Description: dut Location: 49361 -49808 bp Feature: gene Location: 49920-50516 bp Feature: domain Description: slmA Location: 49926-50502 bp Feature: domain Description: slmA Location: 49926-50502 bp Feature: gene Location: 50562-51521 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50697-51246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50697-51 246 bp Feature: gene Location: 51819-52475 bp Feature: domain Description: pyrE Location: 51837-52470 bp Feature: domain Description: pyrE Location: 51 837-52470 bp Feature: gene Location: 52527-53243 bp Feature: domain Description: rph Location: 52530-53238 bp Feature: domain Description: rph Location: 52530-53238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: NRZI01000113.1 Escherichia coli strain A154 NODE_82_length_2736_cov_64.3307, whole genome shotgun sequence (2736 bp)
Overview 1 RT 1: 2-2734 bp Neighborhood of RT #1 [2, 2733] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2-280 bp Feature: domain Description: PHA02517 Location: 5-215 bp Feature: domain Description: PHA02 517 Location: 5-2 15 bp Feature: gene Location: 872-2395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1145-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1145-1877 bp Feature: domain Description: GIIM Note: maturase Location: 1952-2150 bp Feature: domain Description: GIIM Note: maturase Location: 1952 -2 150 bp Feature: gene Location: 2512-2733 bp Feature: domain Description: PHA02517 Location: 2515-2734 bp Feature: domain Description: PHA02 517 Location: 2 515-2 734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)