myRT

myRT report for GCA_003303125.1_ASM330312v1

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Seq: NRZJ01000109.1 Escherichia coli strain A40 NODE_21_length_87363_cov_86.6439, whole genome shotgun sequence (87363 bp)
Overview 1 RT 1: 34121-38004 bp Neighborhood of RT #1 [34121, 38009] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 34121-34837 bp Feature: domain Description: rph Location: 34124-34832 bp Feature: domain Description: rph Location: 341 24-34832 bp Feature: gene Location: 34889-35545 bp Feature: domain Description: pyrE Location: 34907-35540 bp Feature: domain Description: pyrE Location: 34907-35540 bp Feature: gene Location: 35843-36802 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35978-36527 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35978-36527 bp Feature: gene Location: 36848-37444 bp Feature: domain Description: slmA Location: 36854-37430 bp Feature: domain Description: slmA Location: 36854-37430 bp Feature: gene Location: 37551-38009 bp Feature: domain Description: dut Location: 37557-38004 bp Feature: domain Description: dut Location: 37557-38004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NRZJ01000116.1 Escherichia coli strain A40 NODE_61_length_8634_cov_98.9516, whole genome shotgun sequence (8634 bp)
Overview 1 RT 1: 1-4162 bp Neighborhood of RT #1 [1, 4162] PRK11447 RAYT RVT-GII GIIM Feature: gene Location: 1-1041 bp Feature: domain Description: PRK11447 Location: 4-1042 bp Feature: domain Description: PRK11447 Location: 4-1042 bp Feature: gene Location: 1388-1927 bp Feature: domain Description: RAYT Location: 1466-1829 bp Feature: domain Description: RAYT Location: 1466-182 9 bp Feature: gene Location: 2081-3427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369-2987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 369-2 987 bp Feature: domain Description: GIIM Note: maturase Location: 3035-3266 bp Feature: domain Description: GIIM Note: maturase Location: 3035-32 66 bp Feature: gene Location: 3458-3655 bp Feature: gene Location: 4019-4162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11447 (cellulose synthase subunit BcsC; Provisional), RAYT (COG1943), RVT-GII, GIIM (pfam08388)

Seq: NRZJ01000026.1 Escherichia coli strain A40 NODE_83_length_2937_cov_89.7477, whole genome shotgun sequence (2937 bp)
Overview 1 RT 1: 872-2339 bp Neighborhood of RT #1 [872, 2731] DDE_Tnp_IS1 InsA RVT-GII Feature: gene Location: 872-1249 bp Feature: domain Description: DDE_Tnp_IS1 Location: 875-1247 bp Feature: domain Description: DDE_Tnp_IS1 Location: 875-1247 bp Feature: gene Location: 1294-1569 bp Feature: domain Description: InsA Location: 1297-1561 bp Feature: domain Description: InsA Location: 1297-1561 bp Feature: gene Location: 1721-2731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1727-2339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1727-23 3 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), RVT-GII, DDE_Tnp_IS1 (pfam03400)