myRT

myRT report for GCA_003303495.1_ASM330349v1

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Seq: NSAB01000190.1 Escherichia coli strain A430 NODE_128_length_2487_cov_109.477, whole genome shotgun sequence (2487 bp)
Overview 1 RT 1: 3-2370 bp Neighborhood of RT #1 [3, 2405] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3-164 bp Feature: gene Location: 738-2405 bp Feature: domain Description: RVT_N Location: 786-1023 bp Feature: domain Description: RVT_N Location: 786-1 023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074-1716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 074-1 71 6 bp Feature: domain Description: GIIM Note: maturase Location: 1767-2001 bp Feature: domain Description: GIIM Note: maturase Location: 1 767-2001 bp Feature: domain Description: HNHc Note: nucleases Location: 2211-2370 bp Feature: domain Description: HNHc Note: nucleases Location: 221 1 -2370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NSAB01000202.1 Escherichia coli strain A430 NODE_33_length_53433_cov_78.1579, whole genome shotgun sequence (53433 bp)
Overview 1 RT 1: 45327-53430 bp Neighborhood of RT #1 [45327, 53430] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Feature: gene Location: 45327-47909 bp Feature: domain Description: mutS1 Location: 45378-47898 bp Feature: domain Description: mutS1 Location: 45378-47898 bp Feature: gene Location: 48054-49514 bp Feature: domain Description: INT_Rci_Hp1_C Location: 48429-48636 bp Feature: domain Description: INT_Rci_Hp1_C Location: 4842 9-48636 bp Feature: domain Description: INT_P4_C Location: 48855-49392 bp Feature: domain Description: INT_P4_C Location: 48855-49392 bp Feature: gene Location: 50770-52788 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51340-51790 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51340-51790 bp Feature: gene Location: 53215-53430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8