myRT

myRT report for GCA_003303535.1_ASM330353v1

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Seq: BGVA01000016.1 Escherichia coli TUM18669 DNA, sequence016, whole genome shotgun sequence (102532 bp)
Overview 1 RT 1: 99708-102399 bp Neighborhood of RT #1 [99708, 102530] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 99708-100970 bp Feature: domain Description: YesM Location: 100221-100962 bp Feature: domain Description: YesM Location: 1 00221 -1 00962 bp Feature: gene Location: 101000-101170 bp Feature: gene Location: 101520-102041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101526-101808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 526-1 01 808 bp Feature: domain Description: GIIM Note: maturase Location: 101856-102036 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 856-1 02036 bp Feature: gene Location: 102069-102530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102321-102399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02321 -1 02399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: BGVA01000034.1 Escherichia coli TUM18669 DNA, sequence034, whole genome shotgun sequence (51196 bp)
Overview 1 RT 1: 22416-28659 bp Neighborhood of RT #1 [22416, 28796] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22416-22682 bp Feature: domain Description: Phage_integrase Location: 22482-22578 bp Feature: domain Description: Phage_integrase Location: 2 2 482 -2 2 578 bp Feature: gene Location: 22765-23235 bp Feature: gene Location: 23582-26791 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24110-24599 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 4110-2 4599 bp Feature: domain Description: nitrilase Location: 26105-26702 bp Feature: domain Description: nitrilase Location: 2 6105-2 6702 bp Feature: gene Location: 27086-27889 bp Feature: domain Description: AbiEi_3_N Location: 27119-27380 bp Feature: domain Description: AbiEi_3_N Location: 2 7119-2 7380 bp Feature: domain Description: AbiEi_3 Location: 27392-27848 bp Feature: domain Description: AbiEi_3 Location: 2 7392 -2 7848 bp Feature: gene Location: 27876-28796 bp Feature: domain Description: AbiEii Location: 27918-28659 bp Feature: domain Description: AbiEii Location: 2 7918-2 8659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: BGVA01000064.1 Escherichia coli TUM18669 DNA, sequence064, whole genome shotgun sequence (13354 bp)
Overview 1 RT 1: 3-2228 bp 2 RT 2: 11429-13314 bp Neighborhood of RT #1 [3, 2245] RVT-GII GIIM PHA02517 FadR Neighborhood of RT #2 [11429, 13352] Asparaginase_2 RVT-GII Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1451-1891 bp Feature: domain Description: PHA02517 Location: 1454-1862 bp Feature: domain Description: PHA02517 Location: 1454-1862 bp Feature: gene Location: 2111-2245 bp Feature: domain Description: FadR Location: 2126-2228 bp Feature: domain Description: FadR Location: 2126-2228 bp Feature: gene Location: 11429-12460 bp Feature: domain Description: Asparaginase_2 Location: 11519-12452 bp Feature: domain Description: Asparaginase_2 Location: 11519-12452 bp Feature: gene Location: 12787-12936 bp Feature: gene Location: 12984-13352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13212-13314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 212-13 3 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), FadR (COG2186), Asparaginase_2 (pfam01112)

Seq: BGVA01000069.1 Escherichia coli TUM18669 DNA, sequence069, whole genome shotgun sequence (11765 bp)
Overview 1 RT 1: 3-1077 bp Neighborhood of RT #1 [3, 1085] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-14 1 bp Feature: gene Location: 341-652 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: domain Description: PRK10173 Location: 34 4 -563 bp Feature: gene Location: 636-1085 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: BGVA01000165.1 Escherichia coli TUM18669 DNA, sequence165, whole genome shotgun sequence (919 bp)
Overview 1 RT 1: 3-916 bp Neighborhood of RT #1 [3, 916] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 623-916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII