myRT

myRT report for GCA_003304445.1_ASM330444v1

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Seq: NRYF01000037.1 Escherichia coli strain A7 NODE_17_length_90533_cov_88.638, whole genome shotgun sequence (90533 bp)
Overview 1 RT 1: 3-3827 bp 2 RT 2: 41643-45525 bp Neighborhood of RT #1 [3, 3877] PHA02517 RVT-GII GIIM PHA02517 GlpR WYL Neighborhood of RT #2 [41643, 45530] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 3-164 bp Feature: domain Description: PHA02517 Location: 9-99 bp Feature: domain Description: PHA0251 7 Location: 9-99 bp Feature: gene Location: 756-2279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 029-1 761 bp Feature: domain Description: GIIM Note: maturase Location: 1836-2034 bp Feature: domain Description: GIIM Note: maturase Location: 1 836-2034 bp Feature: gene Location: 2444-2698 bp Feature: domain Description: PHA02517 Location: 2447-2687 bp Feature: domain Description: PHA0251 7 Location: 2447-2687 bp Feature: gene Location: 2957-3877 bp Feature: domain Description: GlpR Location: 2987-3107 bp Feature: domain Description: GlpR Location: 2987-31 07 bp Feature: domain Description: WYL Location: 3344-3827 bp Feature: domain Description: WYL Location: 3344-3827 bp Feature: gene Location: 41643-42359 bp Feature: domain Description: rph Location: 41646-42354 bp Feature: domain Description: rph Location: 41 646-42354 bp Feature: gene Location: 42410-43066 bp Feature: domain Description: pyrE Location: 42428-43061 bp Feature: domain Description: pyrE Location: 42428-43061 bp Feature: gene Location: 43364-44323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43499-44048 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 43499-44048 bp Feature: gene Location: 44369-44965 bp Feature: domain Description: slmA Location: 44375-44951 bp Feature: domain Description: slmA Location: 44375-44951 bp Feature: gene Location: 45072-45530 bp Feature: domain Description: dut Location: 45078-45525 bp Feature: domain Description: dut Location: 45078-45525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), GlpR (COG1349), WYL (pfam13280), RVT-GII, GIIM (pfam08388), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: NRYF01000103.1 Escherichia coli strain A7 NODE_52_length_13090_cov_88.4654, whole genome shotgun sequence (13090 bp)
Overview 1 RT 1: 220-2520 bp Neighborhood of RT #1 [220, 2520] RVT-GII GIIM RVT-GII Feature: gene Location: 220-390 bp Feature: gene Location: 553-1206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556-964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556-964 bp Feature: domain Description: GIIM Note: maturase Location: 1012-1204 bp Feature: domain Description: GIIM Note: maturase Location: 1012 -12 04 bp Feature: gene Location: 1179-1613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371-1587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371-1587 bp Feature: gene Location: 1782-1979 bp Feature: gene Location: 2377-2520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)