myRT

myRT report for GCA_003304775.1_ASM330477v1

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Seq: NSAG01000173.1 Escherichia coli strain A3 NODE_34_length_40464_cov_110.485, whole genome shotgun sequence (40464 bp)
Overview 1 RT 1: 2-5496 bp Neighborhood of RT #1 [2, 5498] Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-439 bp Feature: domain Description: Phage_fiber Location: 5-38 bp Feature: domain Description: Phage_fiber Location: 5-38 bp Feature: domain Description: Phage_fiber Location: 95-134 bp Feature: domain Description: Phage_fiber Location: 95-1 34 bp Feature: domain Description: Phage_fiber Location: 140-167 bp Feature: domain Description: Phage_fiber Location: 1 40-1 67 bp Feature: domain Description: Phage_fiber Location: 242-281 bp Feature: domain Description: Phage_fiber Location: 242-281 bp Feature: domain Description: Phage_fiber Location: 287-317 bp Feature: domain Description: Phage_fiber Location: 287-31 7 bp Feature: gene Location: 439-1023 bp Feature: domain Description: Caudo_TAP Location: 655-1012 bp Feature: domain Description: Caudo_TAP Location: 655-1 01 2 bp Feature: gene Location: 1468-3072 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1759-2350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 759-2350 bp Feature: domain Description: TIR_2 Location: 2677-2965 bp Feature: domain Description: TIR_2 Location: 2677-2965 bp Feature: gene Location: 3432-3692 bp Feature: domain Description: PRK10597 Location: 3435-3675 bp Feature: domain Description: PRK1 0597 Location: 3435-3675 bp Feature: gene Location: 3912-5498 bp Feature: domain Description: prfC Location: 3930-5496 bp Feature: domain Description: prfC Location: 3930-5496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), Phage_fiber (pfam03335), prfC (TIGR00503), Caudo_TAP (pfam02413)

Seq: NSAG01000010.1 Escherichia coli strain A3 NODE_50_length_13930_cov_104.899, whole genome shotgun sequence (13930 bp)
Overview 1 RT 1: 2855-6458 bp Neighborhood of RT #1 [2855, 6583] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2855-3112 bp Feature: gene Location: 3143-3418 bp Feature: gene Location: 3992-5659 bp Feature: RT Description: RVT_N Location: 4040-4277 bp Feature: RT Description: RVT_N Location: 4040-42 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4328-4970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432 8-4970 bp Feature: domain Description: GIIM Note: maturase Location: 5021-5255 bp Feature: domain Description: GIIM Note: maturase Location: 502 1-52 55 bp Feature: domain Description: HNHc Note: nucleases Location: 5465-5624 bp Feature: domain Description: HNHc Note: nucleases Location: 5465-562 4 bp Feature: gene Location: 5973-6164 bp Feature: gene Location: 6161-6583 bp Feature: domain Description: DUF1380 Location: 6164-6458 bp Feature: domain Description: DUF1380 Location: 6164-6458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)