myRT

myRT report for GCA_003304865.1_ASM330486v1

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Seq: NSAY01000117.1 Escherichia coli strain A84 NODE_33_length_39723_cov_72.0672, whole genome shotgun sequence (39723 bp)
Overview 1 RT 1: 34914-39711 bp Neighborhood of RT #1 [34914, 39722] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 34914-36500 bp Feature: domain Description: prfC Location: 34932-36498 bp Feature: domain Description: prfC Location: 34932-36498 bp Feature: gene Location: 36720-36980 bp Feature: domain Description: PRK10597 Location: 36723-36963 bp Feature: domain Description: PRK1 0597 Location: 36723-36963 bp Feature: gene Location: 37338-38942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37629-38220 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37629-38220 bp Feature: domain Description: TIR_2 Location: 38547-38880 bp Feature: domain Description: TIR_2 Location: 38547-38880 bp Feature: gene Location: 39387-39722 bp Feature: domain Description: Caudo_TAP Location: 39399-39711 bp Feature: domain Description: Caudo_TAP Location: 39399-3971 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)

Seq: NSAY01000091.1 Escherichia coli strain A84 NODE_55_length_9293_cov_58.7749, whole genome shotgun sequence (9293 bp)
Overview 1 RT 1: 5487-9291 bp Neighborhood of RT #1 [5487, 9290] RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 5487-5624 bp Feature: gene Location: 5714-5983 bp Feature: gene Location: 6008-7354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6296-6914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 96-6914 bp Feature: domain Description: GIIM Note: maturase Location: 6962-7193 bp Feature: domain Description: GIIM Note: maturase Location: 6962 -7193 bp Feature: gene Location: 7508-8047 bp Feature: domain Description: RAYT Location: 7586-7949 bp Feature: domain Description: RAYT Location: 7586-7949 bp Feature: gene Location: 8394-9290 bp Feature: domain Description: PRK11447 Location: 8397-9291 bp Feature: domain Description: PRK11447 Location: 8397-92 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional)

Seq: NSAY01000122.1 Escherichia coli strain A84 NODE_81_length_3043_cov_103.913, whole genome shotgun sequence (3043 bp)
Overview 1 RT 1: 3-3038 bp Neighborhood of RT #1 [3, 3040] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-650 bp Feature: domain Description: PHA02517 Location: 246-585 bp Feature: domain Description: PHA02517 Location: 246-585 bp Feature: gene Location: 1242-2765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515-2247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515-2247 bp Feature: domain Description: GIIM Note: maturase Location: 2325-2520 bp Feature: domain Description: GIIM Note: maturase Location: 23 25-2520 bp Feature: gene Location: 2888-3040 bp Feature: domain Description: PHA02517 Location: 2891-3038 bp Feature: domain Description: PHA02517 Location: 2891-3 03 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)