myRT

myRT report for GCA_003305065.1_ASM330506v1

Download annotations/find similar RTs

Seq: BGVP01000005.1 Escherichia coli TUM18684 DNA, sequence005, whole genome shotgun sequence (320117 bp)
Overview 1 RT 1: 286513-292544 bp Neighborhood of RT #1 [286513, 292544] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 286513-287433 bp Feature: domain Description: AbiEii Location: 286555-287296 bp Feature: domain Description: AbiEii Location: 286555-287296 bp Feature: gene Location: 287420-288202 bp Feature: domain Description: AbiEi_3_N Location: 287426-287693 bp Feature: domain Description: AbiEi_3_N Location: 287426-287693 bp Feature: domain Description: AbiEi_3 Location: 287708-288161 bp Feature: domain Description: AbiEi_3 Location: 287708-2881 61 bp Feature: gene Location: 288518-291727 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 289046-289535 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 289046-289535 bp Feature: domain Description: nitrilase Location: 291041-291638 bp Feature: domain Description: nitrilase Location: 291 041 -291 638 bp Feature: gene Location: 291888-292028 bp Feature: domain Description: Phage_ASH Location: 291915-292008 bp Feature: domain Description: Phage_ASH Location: 291 91 5-292008 bp Feature: gene Location: 292074-292544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: BGVP01000028.1 Escherichia coli TUM18684 DNA, sequence028, whole genome shotgun sequence (16477 bp)
Overview 1 RT 1: 2245-6245 bp Neighborhood of RT #1 [2245, 6253] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 2245-3606 bp Feature: domain Description: DcuC Location: 2248-3580 bp Feature: domain Description: DcuC Location: 2 2 48-3580 bp Feature: gene Location: 3659-4030 bp Feature: gene Location: 4252-4698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4558-4660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4558-4660 bp Feature: gene Location: 4746-4895 bp Feature: gene Location: 5222-6253 bp Feature: domain Description: Asparaginase_2 Location: 5312-6245 bp Feature: domain Description: Asparaginase_2 Location: 5312 -62 45 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: BGVP01000065.1 Escherichia coli TUM18684 DNA, sequence065, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)