myRT

myRT report for GCA_003306395.1_ASM330639v1

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Seq: BGYD01000044.1 Escherichia coli TUM18750 DNA, sequence044, whole genome shotgun sequence (41679 bp)
Overview 1 RT 1: 27408-35109 bp Neighborhood of RT #1 [27408, 35246] proA RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 27408-28661 bp Feature: domain Description: proA Location: 27435-28626 bp Feature: domain Description: proA Location: 27435-28626 bp Feature: gene Location: 29215-29685 bp Feature: gene Location: 30032-33241 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30560-31049 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30560-31 049 bp Feature: domain Description: nitrilase Location: 32555-33152 bp Feature: domain Description: nitrilase Location: 32555-331 52 bp Feature: gene Location: 33536-34339 bp Feature: domain Description: AbiEi_3_N Location: 33569-33830 bp Feature: domain Description: AbiEi_3_N Location: 33569-33830 bp Feature: domain Description: AbiEi_3 Location: 33842-34298 bp Feature: domain Description: AbiEi_3 Location: 33842-34298 bp Feature: gene Location: 34326-35246 bp Feature: domain Description: AbiEii Location: 34368-35109 bp Feature: domain Description: AbiEii Location: 34368-351 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: BGYD01000087.1 Escherichia coli TUM18750 DNA, sequence087, whole genome shotgun sequence (5691 bp)
Overview 1 RT 1: 2283-5609 bp Neighborhood of RT #1 [2283, 5609] FRG RVT-Retrons HTH_XRE Feature: gene Location: 2283-2432 bp Feature: gene Location: 2471-3835 bp Feature: domain Description: FRG Location: 3038-3323 bp Feature: domain Description: FRG Location: 3038-332 3 bp Feature: gene Location: 3944-4894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4124-4667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 412 4-4667 bp Feature: gene Location: 4860-5180 bp Feature: domain Description: HTH_XRE Location: 4875-5034 bp Feature: domain Description: HTH_XRE Location: 4875-5034 bp Feature: gene Location: 5217-5609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: BGYD01000103.1 Escherichia coli TUM18750 DNA, sequence103, whole genome shotgun sequence (2927 bp)
Overview 1 RT 1: 158-2507 bp Neighborhood of RT #1 [158, 2752] PHA02517 RVT-GII GIIM Feature: gene Location: 158-637 bp Feature: domain Description: PHA02517 Location: 218-572 bp Feature: domain Description: PHA02517 Location: 218-572 bp Feature: gene Location: 1229-2752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1502-2234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1502-223 4 bp Feature: domain Description: GIIM Note: maturase Location: 2309-2507 bp Feature: domain Description: GIIM Note: maturase Location: 23 09-2507 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)