myRT

myRT report for GCA_003306555.1_ASM330655v1

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Seq: BGYL01000025.1 Escherichia coli TUM18758 DNA, sequence025, whole genome shotgun sequence (71010 bp)
Overview 1 RT 1: 62714-66655 bp Neighborhood of RT #1 [62714, 66655] RVT-Retrons Feature: gene Location: 62714-62953 bp Feature: gene Location: 63260-63436 bp Feature: gene Location: 63509-65281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63668-64286 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63668-64286 bp Feature: gene Location: 65303-65470 bp Feature: gene Location: 65516-66655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: BGYL01000046.1 Escherichia coli TUM18758 DNA, sequence046, whole genome shotgun sequence (14964 bp)
Overview 1 RT 1: 7194-11067 bp Neighborhood of RT #1 [7194, 11438] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7194-7370 bp Feature: gene Location: 7778-8482 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: gene Location: 8460-9830 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-92 94 bp Feature: gene Location: 9943-10527 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: gene Location: 10536-11438 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: BGYL01000060.1 Escherichia coli TUM18758 DNA, sequence060, whole genome shotgun sequence (5846 bp)
Overview 1 RT 1: 270-3435 bp Neighborhood of RT #1 [270, 3440] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 270-479 bp Feature: gene Location: 614-2515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881-1712 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: Intron_maturas2 Location: 1826-2084 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: domain Description: HNHc Note: nucleases Location: 2258-2420 bp Feature: gene Location: 2710-3150 bp Feature: domain Description: PRK13732 Location: 2716-3148 bp Feature: domain Description: PRK13 73 2 Location: 2716-3 148 bp Feature: gene Location: 3207-3440 bp Feature: domain Description: DUF905 Location: 3237-3435 bp Feature: domain Description: DUF905 Location: 3 23 7-3 43 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: BGYL01000070.1 Escherichia coli TUM18758 DNA, sequence070, whole genome shotgun sequence (3985 bp)
Overview 1 RT 1: 3-3475 bp Neighborhood of RT #1 [3, 3475] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3-449 bp Feature: domain Description: DUF1380 Location: 30-324 bp Feature: domain Description: DUF1380 Location: 30-324 bp Feature: gene Location: 950-2617 bp Feature: domain Description: RVT_N Location: 998-1235 bp Feature: domain Description: RVT_N Location: 998-1235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286-1928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286-1928 bp Feature: domain Description: GIIM Note: maturase Location: 1979-2213 bp Feature: domain Description: GIIM Note: maturase Location: 1979-2213 bp Feature: domain Description: HNHc Note: nucleases Location: 2423-2582 bp Feature: domain Description: HNHc Note: nucleases Location: 24 23-2582 bp Feature: gene Location: 2897-3079 bp Feature: gene Location: 3191-3475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)