myRT

myRT report for GCA_003306675.1_ASM330667v1

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Seq: BGYR01000015.1 Escherichia coli TUM18764 DNA, sequence015, whole genome shotgun sequence (125202 bp)
Overview 1 RT 1: 122378-125069 bp Neighborhood of RT #1 [122378, 125200] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 122378-123640 bp Feature: domain Description: YesM Location: 122891-123632 bp Feature: domain Description: YesM Location: 1 22891 -1 23632 bp Feature: gene Location: 123670-123840 bp Feature: gene Location: 124190-124711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124196-124478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 241 96-1 24478 bp Feature: domain Description: GIIM Note: maturase Location: 124526-124706 bp Feature: domain Description: GIIM Note: maturase Location: 1 24526-1 24706 bp Feature: gene Location: 124739-125200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124991-125069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 24991 -1 25069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: BGYR01000048.1 Escherichia coli TUM18764 DNA, sequence048, whole genome shotgun sequence (27954 bp)
Overview 1 RT 1: 224-5348 bp Neighborhood of RT #1 [224, 5348] AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 224-1027 bp Feature: domain Description: AbiEi_3_N Location: 257-518 bp Feature: domain Description: AbiEi_3_N Location: 2 57-518 bp Feature: domain Description: AbiEi_3 Location: 530-986 bp Feature: domain Description: AbiEi_3 Location: 530-986 bp Feature: gene Location: 1322-4531 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1850-2339 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1850-2 339 bp Feature: domain Description: nitrilase Location: 3845-4442 bp Feature: domain Description: nitrilase Location: 3845-4442 bp Feature: gene Location: 4692-4832 bp Feature: domain Description: Phage_ASH Location: 4719-4812 bp Feature: domain Description: Phage_ASH Location: 4719-4812 bp Feature: gene Location: 4878-5348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: BGYR01000064.1 Escherichia coli TUM18764 DNA, sequence064, whole genome shotgun sequence (13354 bp)
Overview 1 RT 1: 3-2228 bp 2 RT 2: 11429-13314 bp Neighborhood of RT #1 [3, 2245] RVT-GII GIIM PHA02517 FadR Neighborhood of RT #2 [11429, 13352] Asparaginase_2 RVT-GII Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1451-1891 bp Feature: domain Description: PHA02517 Location: 1454-1862 bp Feature: domain Description: PHA02517 Location: 1454-1862 bp Feature: gene Location: 2111-2245 bp Feature: domain Description: FadR Location: 2126-2228 bp Feature: domain Description: FadR Location: 2126-2228 bp Feature: gene Location: 11429-12460 bp Feature: domain Description: Asparaginase_2 Location: 11519-12452 bp Feature: domain Description: Asparaginase_2 Location: 11519-12452 bp Feature: gene Location: 12787-12936 bp Feature: gene Location: 12984-13352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13212-13314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 212-13 3 14 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), FadR (COG2186), Asparaginase_2 (pfam01112)

Seq: BGYR01000069.1 Escherichia coli TUM18764 DNA, sequence069, whole genome shotgun sequence (11455 bp)
Overview 1 RT 1: 3-1077 bp Neighborhood of RT #1 [3, 1085] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-14 1 bp Feature: gene Location: 341-652 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: domain Description: PRK10173 Location: 34 4 -563 bp Feature: gene Location: 636-1085 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: BGYR01000144.1 Escherichia coli TUM18764 DNA, sequence144, whole genome shotgun sequence (919 bp)
Overview 1 RT 1: 3-916 bp Neighborhood of RT #1 [3, 916] RVT-GII Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: gene Location: 623-916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII