myRT

myRT report for GCA_003306695.1_ASM330669v1

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Seq: BGYS01000016.1 Escherichia coli TUM18765 DNA, sequence016, whole genome shotgun sequence (147872 bp)
Overview 1 RT 1: 78670-82611 bp Neighborhood of RT #1 [78670, 82611] RVT-Retrons Feature: gene Location: 78670-78909 bp Feature: gene Location: 79216-79392 bp Feature: gene Location: 79465-81237 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79624-80242 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79624-80242 bp Feature: gene Location: 81259-81426 bp Feature: gene Location: 81472-82611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: BGYS01000047.1 Escherichia coli TUM18765 DNA, sequence047, whole genome shotgun sequence (13911 bp)
Overview 1 RT 1: 10422-13843 bp Neighborhood of RT #1 [10422, 13908] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10422-11039 bp Feature: domain Description: autotrans_barl Location: 10545-10986 bp Feature: domain Description: autotrans_barl Location: 10545-10986 bp Feature: gene Location: 11042-11488 bp Feature: domain Description: PHA02517 Location: 11045-11486 bp Feature: domain Description: PHA02 517 Location: 11045-11486 bp Feature: gene Location: 11605-13128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11878-12610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11878-12 610 bp Feature: domain Description: GIIM Note: maturase Location: 12685-12883 bp Feature: domain Description: GIIM Note: maturase Location: 12 685-12 883 bp Feature: gene Location: 13082-13507 bp Feature: gene Location: 13720-13908 bp Feature: domain Description: PHA02517 Location: 13723-13843 bp Feature: domain Description: PHA02 517 Location: 1372 3-13843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BGYS01000049.1 Escherichia coli TUM18765 DNA, sequence049, whole genome shotgun sequence (12795 bp)
Overview 1 RT 1: 1358-5602 bp Neighborhood of RT #1 [1358, 5602] Macro_Appr_pase Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 1358-2260 bp Feature: domain Description: Macro_Appr_pase Location: 1376-1889 bp Feature: domain Description: Macro_Appr_pase Location: 13 76-1889 bp Feature: gene Location: 2269-2853 bp Feature: domain Description: Caudo_TAP Location: 2485-2842 bp Feature: domain Description: Caudo_TAP Location: 2485-2842 bp Feature: gene Location: 2966-4336 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3194-3800 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3 194-3 800 bp Feature: gene Location: 4314-5018 bp Feature: domain Description: SLATT_5 Location: 4476-4986 bp Feature: domain Description: SLATT_5 Location: 4476-4986 bp Feature: gene Location: 5426-5602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Macro_Appr_pase (cd02900), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: BGYS01000060.1 Escherichia coli TUM18765 DNA, sequence060, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 362-4090 bp Neighborhood of RT #1 [362, 4095] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 362-568 bp Feature: gene Location: 902-1111 bp Feature: gene Location: 1246-3147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-2344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-234 4 bp Feature: domain Description: Intron_maturas2 Location: 2458-2716 bp Feature: domain Description: Intron_maturas2 Location: 24 58-2716 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: gene Location: 3342-3794 bp Feature: domain Description: PRK13732 Location: 3348-3792 bp Feature: domain Description: PRK13732 Location: 334 8-3792 bp Feature: gene Location: 3862-4095 bp Feature: domain Description: DUF905 Location: 3892-4090 bp Feature: domain Description: DUF905 Location: 3892-4 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)