myRT

myRT report for GCA_003306855.1_ASM330685v1

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Seq: BGZA01000025.1 Escherichia coli TUM18773 DNA, sequence025, whole genome shotgun sequence (51462 bp)
Overview 1 RT 1: 2374-6315 bp Neighborhood of RT #1 [2374, 6315] RVT-Retrons Feature: gene Location: 2374-3513 bp Feature: gene Location: 3559-3726 bp Feature: gene Location: 3748-5520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3907-4525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3907-4525 bp Feature: gene Location: 5741-5884 bp Feature: gene Location: 6076-6315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: BGZA01000048.1 Escherichia coli TUM18773 DNA, sequence048, whole genome shotgun sequence (13923 bp)
Overview 1 RT 1: 10434-13855 bp Neighborhood of RT #1 [10434, 13920] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 10434-11051 bp Feature: domain Description: autotrans_barl Location: 10557-10998 bp Feature: domain Description: autotrans_barl Location: 10557-10998 bp Feature: gene Location: 11054-11500 bp Feature: domain Description: PHA02517 Location: 11057-11498 bp Feature: domain Description: PHA02 517 Location: 11057-11498 bp Feature: gene Location: 11617-13140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11890-12622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11890-12 62 2 bp Feature: domain Description: GIIM Note: maturase Location: 12697-12895 bp Feature: domain Description: GIIM Note: maturase Location: 12 697-12 895 bp Feature: gene Location: 13094-13519 bp Feature: gene Location: 13732-13920 bp Feature: domain Description: PHA02517 Location: 13735-13855 bp Feature: domain Description: PHA02 517 Location: 13735-13855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BGZA01000049.1 Escherichia coli TUM18773 DNA, sequence049, whole genome shotgun sequence (13380 bp)
Overview 1 RT 1: 7194-11067 bp Neighborhood of RT #1 [7194, 11438] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7194-7370 bp Feature: gene Location: 7778-8482 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: gene Location: 8460-9830 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: gene Location: 9943-10527 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: gene Location: 10536-11438 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: BGZA01000064.1 Escherichia coli TUM18773 DNA, sequence064, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 362-4090 bp Neighborhood of RT #1 [362, 4095] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 362-568 bp Feature: gene Location: 902-1111 bp Feature: gene Location: 1246-3147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-2344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-234 4 bp Feature: domain Description: Intron_maturas2 Location: 2458-2716 bp Feature: domain Description: Intron_maturas2 Location: 24 58-2716 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: gene Location: 3342-3794 bp Feature: domain Description: PRK13732 Location: 3348-3792 bp Feature: domain Description: PRK13732 Location: 334 8-3792 bp Feature: gene Location: 3862-4095 bp Feature: domain Description: DUF905 Location: 3892-4090 bp Feature: domain Description: DUF905 Location: 3892-4 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)