myRT

myRT report for GCA_003306895.1_ASM330689v1

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Seq: BGZC01000016.1 Escherichia coli TUM18775 DNA, sequence016, whole genome shotgun sequence (147873 bp)
Overview 1 RT 1: 65263-69204 bp Neighborhood of RT #1 [65263, 69204] RVT-Retrons Feature: gene Location: 65263-66402 bp Feature: gene Location: 66448-66615 bp Feature: gene Location: 66637-68409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66796-67414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66796-6741 4 bp Feature: gene Location: 68630-68773 bp Feature: gene Location: 68965-69204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: BGZC01000046.1 Escherichia coli TUM18775 DNA, sequence046, whole genome shotgun sequence (13380 bp)
Overview 1 RT 1: 7194-11067 bp Neighborhood of RT #1 [7194, 11438] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7194-7370 bp Feature: gene Location: 7778-8482 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: gene Location: 8460-9830 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-92 94 bp Feature: gene Location: 9943-10527 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: gene Location: 10536-11438 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: BGZC01000063.1 Escherichia coli TUM18775 DNA, sequence063, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 362-4090 bp Neighborhood of RT #1 [362, 4095] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 362-568 bp Feature: gene Location: 902-1111 bp Feature: gene Location: 1246-3147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-2344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513 -23 44 bp Feature: domain Description: Intron_maturas2 Location: 2458-2716 bp Feature: domain Description: Intron_maturas2 Location: 2458-2716 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3 052 bp Feature: gene Location: 3342-3794 bp Feature: domain Description: PRK13732 Location: 3348-3792 bp Feature: domain Description: PRK13 73 2 Location: 3 3 48-3 792 bp Feature: gene Location: 3862-4095 bp Feature: domain Description: DUF905 Location: 3892-4090 bp Feature: domain Description: DUF905 Location: 3 892-4090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: BGZC01000068.1 Escherichia coli TUM18775 DNA, sequence068, whole genome shotgun sequence (4562 bp)
Overview 1 RT 1: 1073-4494 bp Neighborhood of RT #1 [1073, 4559] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1073-1690 bp Feature: domain Description: autotrans_barl Location: 1196-1637 bp Feature: domain Description: autotrans_barl Location: 1196-1637 bp Feature: gene Location: 1693-2139 bp Feature: domain Description: PHA02517 Location: 1696-2137 bp Feature: domain Description: PHA02517 Location: 1696-2137 bp Feature: gene Location: 2256-3779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2529-3261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2529-3261 bp Feature: domain Description: GIIM Note: maturase Location: 3336-3534 bp Feature: domain Description: GIIM Note: maturase Location: 3336-3534 bp Feature: gene Location: 3733-4158 bp Feature: gene Location: 4371-4559 bp Feature: domain Description: PHA02517 Location: 4374-4494 bp Feature: domain Description: PHA02517 Location: 4 374 -4 4 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)