myRT

myRT report for GCA_003306955.1_ASM330695v1

Download annotations/find similar RTs

Seq: BGZF01000017.1 Escherichia coli TUM18778 DNA, sequence017, whole genome shotgun sequence (147859 bp)
Overview 1 RT 1: 78657-82598 bp Neighborhood of RT #1 [78657, 82598] RVT-Retrons Feature: gene Location: 78657-78896 bp Feature: gene Location: 79203-79379 bp Feature: gene Location: 79452-81224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79611-80229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7961 1 -80229 bp Feature: gene Location: 81246-81413 bp Feature: gene Location: 81459-82598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: BGZF01000043.1 Escherichia coli TUM18778 DNA, sequence043, whole genome shotgun sequence (12795 bp)
Overview 1 RT 1: 7194-11067 bp Neighborhood of RT #1 [7194, 11438] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7194-7370 bp Feature: gene Location: 7778-8482 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: domain Description: SLATT_5 Location: 7940-8450 bp Feature: gene Location: 8460-9830 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-9294 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8688-92 94 bp Feature: gene Location: 9943-10527 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: domain Description: Caudo_TAP Location: 10159-10516 bp Feature: gene Location: 10536-11438 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Feature: domain Description: Macro_Appr_pase Location: 10554-11067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: BGZF01000045.1 Escherichia coli TUM18778 DNA, sequence045, whole genome shotgun sequence (11935 bp)
Overview 1 RT 1: 8446-11867 bp Neighborhood of RT #1 [8446, 11932] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8446-9063 bp Feature: domain Description: autotrans_barl Location: 8569-9010 bp Feature: domain Description: autotrans_barl Location: 8569-9010 bp Feature: gene Location: 9066-9512 bp Feature: domain Description: PHA02517 Location: 9069-9510 bp Feature: domain Description: PHA02517 Location: 9069-9510 bp Feature: gene Location: 9629-11152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9902-10634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9902-1063 4 bp Feature: domain Description: GIIM Note: maturase Location: 10709-10907 bp Feature: domain Description: GIIM Note: maturase Location: 10709-10907 bp Feature: gene Location: 11106-11531 bp Feature: gene Location: 11744-11932 bp Feature: domain Description: PHA02517 Location: 11747-11867 bp Feature: domain Description: PHA02517 Location: 11747-11867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BGZF01000057.1 Escherichia coli TUM18778 DNA, sequence057, whole genome shotgun sequence (5861 bp)
Overview 1 RT 1: 362-4090 bp Neighborhood of RT #1 [362, 4095] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 362-568 bp Feature: gene Location: 902-1111 bp Feature: gene Location: 1246-3147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-2344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1513-234 4 bp Feature: domain Description: Intron_maturas2 Location: 2458-2716 bp Feature: domain Description: Intron_maturas2 Location: 24 58-2716 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: domain Description: HNHc Note: nucleases Location: 2890-3052 bp Feature: gene Location: 3342-3794 bp Feature: domain Description: PRK13732 Location: 3348-3792 bp Feature: domain Description: PRK13732 Location: 334 8-3792 bp Feature: gene Location: 3862-4095 bp Feature: domain Description: DUF905 Location: 3892-4090 bp Feature: domain Description: DUF905 Location: 3892-4 090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)