myRT

myRT report for GCA_003311425.1_ASM331142v1

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Seq: PTEM01000049.1 Staphylococcus aureus strain 1AB046 1AD046_R1_(paired)_contig_49, whole genome shotgun sequence (4554 bp)
Overview 1 RT 1: 2-3573 bp Neighborhood of RT #1 [2, 3573] doc_partner Doc RVT-GII GIIM Feature: gene Location: 2-241 bp Feature: domain Description: doc_partner Location: 5-233 bp Feature: domain Description: doc_partner Location: 5-233 bp Feature: gene Location: 279-680 bp Feature: domain Description: Doc Location: 294-666 bp Feature: domain Description: Doc Location: 294-666 bp Feature: gene Location: 761-2035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962-1 577 bp Feature: domain Description: GIIM Note: maturase Location: 1637-1844 bp Feature: domain Description: GIIM Note: maturase Location: 1 637-1 844 bp Feature: gene Location: 2633-3217 bp Feature: gene Location: 3319-3573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PTEM01000074.1 Staphylococcus aureus strain 1AB046 1AD046_R1_(paired)_contig_74, whole genome shotgun sequence (1442 bp)
Overview 1 RT 1: 1-1436 bp Neighborhood of RT #1 [1, 1441] PadR RVT-GII Feature: gene Location: 1-186 bp Feature: domain Description: PadR Location: 4-91 bp Feature: domain Description: PadR Location: 4-91 bp Feature: gene Location: 755-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082-1436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082 -1436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PadR (pfam03551), RVT-GII

Seq: PTEM01000077.1 Staphylococcus aureus strain 1AB046 1AD046_R1_(paired)_contig_77, whole genome shotgun sequence (1598 bp)
Overview 1 RT 1: 3-1236 bp Neighborhood of RT #1 [3, 1289] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-1289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-513 bp Feature: domain Description: Intron_maturas2 Location: 654-945 bp Feature: domain Description: Intron_maturas2 Location: 654-945 bp Feature: domain Description: HNHc Note: nucleases Location: 1077-1236 bp Feature: domain Description: HNHc Note: nucleases Location: 1077-123 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)